Feature/batch small jobs#49

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feature/batch-small-jobs

Jul 9, 2026

Commits on Jun 29, 2026

Batch small inference jobs into one Slurm job (issue #48)

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Force --allow_resume for batched inference + document batching

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Batch as a per-fold loop in one job; fix AF3 + Slurm-executor bugs

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Commits on Jul 8, 2026

Allow multiple SLURM partitions for structure inference

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Merge pull request #50 from KosinskiLab/feature/multi-partition-support
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Docs: promote multi-partition to a visible subsection, fix wording

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Fix: don't pass --jax_compilation_cache_dir to the AlphaFold2 backend

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Docs: warn that inference flags are backend-exclusive; complete the lists

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Warn at parse time on inference flags the backend won't accept

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Commits on Jul 9, 2026

Docs: note AF3 batching depends on container + shared filesystem

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