Single-cell and spatial multi-omics reveal a recurrent multicellular niche at the tumor-stroma interface in multidrug resistance

This repository contains R scripts for selected single-cell RNA sequencing, spatial transcriptomics, Xenium, and related analyses supporting the associated manuscript.

Figure 1.R through Figure 7.R contain analysis and plotting code for selected main-figure panels. Xenium.R contains the Xenium analysis used in Figure S12. Input data files are not stored in this code repository; data availability is described in the associated manuscript.

For questions, please contact [email protected].