Skip to content

[internals] Add precompile statements #45

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Draft
lrnv wants to merge 2 commits into
base: main
Choose a base branch
from
Draft

[internals] Add precompile statements #45

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
06490d7
add precompile statements
lrnv May 11, 2024
6881844
add other methods ?
lrnv May 11, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 2 additions & 1 deletion Project.toml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,7 @@ CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
PrecompileTools = "aea7be01-6a6a-4083-8856-8a6e6704d82a"
RateTables = "d40fb65e-c2ee-4113-9e14-cb96ca0acb32"
StatsAPI = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
Expand All @@ -19,8 +20,8 @@ CSV = "0.10"
DataFrames = "1"
Distributions = "0.25"
LinearAlgebra = "1.6"
RateTables = "0.1"
RCall = "0.14"
RateTables = "0.1"
StatsAPI = "1"
StatsBase = "0.34"
StatsModels = "0.7"
Expand Down
18 changes: 17 additions & 1 deletion src/NetSurvival.jl
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
module NetSurvival

using PrecompileTools: @setup_workload, @compile_workload # this is a small dependency
using DataFrames
using Distributions
using LinearAlgebra
Expand Down Expand Up @@ -32,4 +32,20 @@ export Surv, Strata
export colrec
export @formula

@setup_workload begin
# Putting some things in `@setup_workload` instead of `@compile_workload` can reduce the size of the
# precompile file and potentially make loading faster.
@compile_workload begin
fit(PoharPerme, @formula(Surv(time,status)~1), colrec, slopop)
fit(PoharPerme, @formula(Surv(time,status)~sex), colrec, slopop)
fit(EdererI, @formula(Surv(time,status)~1), colrec, slopop)
fit(EdererII, @formula(Surv(time,status)~1), colrec, slopop)
fit(Hakulinen, @formula(Surv(time,status)~1), colrec, slopop)
fit(GraffeoTest, @formula(Surv(time,status)~sex), colrec, slopop)
fit(GraffeoTest, @formula(Surv(time,status)~sex+Strata(stage)), colrec, slopop)
fit(CrudeMortality, @formula(Surv(time,status)~1), colrec, slopop)
end
end


end