Manuscript
CoSTA: Unsupervised Convolutional Neural Network Learning for Spatial Transcriptomics Analysis
CoSTA is an analysis approach for understanding spatial gene relationship of spatial transcriptomics.
Please look at offical CoSTA github at https://github.com/rpmccordlab/CoSTA
To reproduce results in Manuscript, please follow instruction in notebook tutorial under the foder of "CoSTA".
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|----Analyzing_Slide-seq_via_CoSTA.ipynb
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|----Analyzing_MERFISH_via_CoSTA.ipynb
Analysis about comparison with SPARK and SpatialDE is in the folder of "analysis"
- NumPy
- SciPy
- Pandas
- Scikit-learn
- NaiveDE
- Pytorch