GGIR I/O rework: act-int-ready input, separate output root, gt3x compare tests#20
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bahaaaldin214 wants to merge 8 commits into
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GGIR I/O rework: act-int-ready input, separate output root, gt3x compare tests#20bahaaaldin214 wants to merge 8 commits into
bahaaaldin214 wants to merge 8 commits into
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Compare gt3x and raw GGIR outputs with focused contract tests. Co-authored-by: Copilot <[email protected]>
pipe.py: vosslnxft int input to inputs/act-int-ready; add per-project INT_OUT_DIR/OBS_OUT_DIR (int derivatives to 3-experiment/output). gg.py: per-project output_dir so int/obs derivatives never collide. qc.py, group.py: read derivatives from per-project output root. plots.py: add CLI + out_dir override + headless backend. cron.sh: push result commits to writable fork via RESULTS_REMOTE. Co-authored-by: Cursor <[email protected]>
…ult 3) Co-authored-by: Cursor <[email protected]>
…ache) Co-authored-by: Cursor <[email protected]>
Co-authored-by: Cursor <[email protected]>
Co-authored-by: Cursor <[email protected]>
…e datadir + studyname), iterate GGIRfiles not RelativeFiles Co-authored-by: Cursor <[email protected]>
…) to keep box in sync with fork Co-authored-by: Cursor <[email protected]>
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Summary
inputs/act-int-readyintervention input and write derivatives to a separate per-project output root (3-experiment/output/...), keeping inputs and outputs cleanly separated.--output_dirplumbing throughgg.py/acc_new.R/main.pyso intervention and observational runs target distinct output roots.act/utils/plots.pyas a CLI (out_dir override + headless backend) for gt3x-vs-raw comparison plots.cron.sh: push automated result commits to a writable fork remote (RESULTS_REMOTE) since upstream origin is read-only for the service account.Changes
act/core/acc_new.R,act/core/gg.py,act/main.py: per-project output dir + GT3X preference.act/utils/pipe.py:vosslnxftprofile ->inputs/act-int-readyinput, separate output root.act/utils/qc.py,act/utils/group.py: read derivatives from the output root.act/utils/plots.py: CLI + headless plotting.act/tests/*: newtest_gt3x_compare.py,test_gt3x_contract.py, smoke updates.Test plan
pytest(61/61 passing locally)bahaa pipeline ggir) produces derivatives underoutput/derivatives/GGIR-3.2.6/Draft: opened for review/testing before merge.