fix: close all cross-layer trust gaps from the v0.22.0 deep re-audit (RA-01..RA-24)#72

Merged

CodeWithJuber merged 9 commits into

claude/parallel-solving-3dc0ji

Jul 18, 2026

Commits on Jul 18, 2026

fix(config): consolidate repo config, real profiles only, honest metadata (RA-14, RA-15, RA-22..24)
claude
committed
fix(verify): deep verify preserves core status; execute detected runner; honest CLI states (RA-01, RA-08, RA-09)
claude
committed
fix(ledger): validate evidence at load and import time; quarantine invalid records (RA-02)
claude
committed
fix(substrate,doctor,gate): stale atlas non-authoritative; honest health; enforced completion obligations (RA-07, RA-10, RA-19, RA-20)
claude
committed
security(guards): classify git diff/stash/cat-file/archive/grep as readers; visible redactor degradation (RA-05, RA-06)
claude
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fix(init): propagate settings errors; quoted hook paths; pre-validate profile; reversible settings uninstall (RA-04, RA-11..13, RA-17, RA-18)
claude
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docs(changelog): record the audit-remediation fixes for RA-01..RA-24
claude
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fix(mcp): non-destructive emitters with persistent managed set and explicit adoption; auto-sync full-body compare (RA-03, RA-16, RA-21)
claude
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docs(changelog): add MCP emitter fixes (RA-03, RA-16, RA-21)
claude
committed