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Animesh-Kr/README.md
Typing SVG

Portfolio LinkedIn HuggingFace ORCID Twitter Credly

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🧠 About Me

animesh = {
    "role"       : "AI Researcher & MLOps Engineer",
    "education"  : ["MSc Advanced Computer Science @ Newcastle University (2025–26, on track for Distinction)",
                    "B.Tech CSE (AI Specialization) @ AKTU, India"],
    "research"   : ["Medical Image Analysis", "Computer Vision",
                    "Generative AI", "Clinical AI Safety",
                    "Uncertainty Quantification"],
    "goal"       : "Funded PhD in AI/Medical Imaging (Germany, 2026) β€” targeting TU Munich, DKFZ, FAU",
    "location"   : "Newcastle upon Tyne, UK πŸ‡¬πŸ‡§",
    "visa"       : "Eligible: UK Graduate Visa & Netherlands Orientation Year Visa (2026)",
    "fun_fact"   : "I turn retinal scans into decisions β€” one attention map at a time πŸ”¬"
}

πŸš€ Featured Projects

πŸ”¬ OCT Retinal Fluid Segmentation Β  DOI Β  Live Demo Β  Model Weights

PhD-level independent research β€” multi-class retinal fluid segmentation with clinical uncertainty triage

  • Architecture: Dual AttentionTransUNetL ensemble (EfficientNetV2L encoder, 127M params each) + Transformer bottleneck (d_model=512, 16 heads) + 4Γ— Attention Gates + Source-Adaptive BatchNorm
  • Dataset: 4 independent OCT sources β€” DUKE DME, AROI, UMN AMD, UMN DME (4983 training slices)
  • Results: V2L val Dice 0.784 Β± 0.006 across 3 seeds Β· IRF 0.916 Β· SRF 0.856 Β· PED 0.581
  • Novel: UCUS β€” Uncertainty-Weighted Clinical Urgency Score (Monitor / Review / Urgent triage)
  • Clinical Safety: Uncertainty 1.34Γ— higher at inter-grader disagreement pixels (p=3.77e-05) Β· SRF volume r=0.778 Β· PED volume r=0.841
  • Deployment: INT8 quantised (510MB β†’ 132MB, 3.9Γ—) Β· ONNX export Β· Streamlit dashboard Β· FastAPI endpoint
  • Targeting: arXiv preprint + OMIA 2027 Workshop at MICCAI

PyTorch EfficientNetV2L TransUNet MC Dropout ONNX Streamlit FastAPI HuggingFace


πŸ”¬ OCT Retinal Disease Classification Β  DOI Β  Live Demo Β  Model Weights

Production-grade clinical AI system for automated retinal disease detection

  • Architecture: EfficientNetV2L + 4Γ— Multi-Head Attention + Learnable Positional Encoding + XGBoost hybrid head
  • Dataset: Kermany et al. (84K OCT images β€” CNV, DME, DRUSEN, NORMAL)
  • Results: 5-seed validated Β· 95.43% Β± 0.27% Accuracy Β· Macro AUC 0.9941 Β± 0.0006 Β· ECE 0.0024
  • RETFound comparison: Matches 303M-parameter foundation model while being 5Γ— more stable across seeds
  • Clinical Safety: Mahalanobis OOD Detection Β· MC Dropout Β· Temperature Scaling Β· Grad-CAM Β· SHAP
  • Deployment: ONNX 237MB Β· ~62.9ms CPU Β· Streamlit + Gradio + FastAPI on HuggingFace

TensorFlow EfficientNetV2L XGBoost Optuna SHAP Streamlit HuggingFace


πŸ”— [OCT Complete Diagnostic Pipeline] Live Demo

End-to-end clinical pipeline connecting both retinal AI projects

  • Stage 1: Classification (CNV / DME / DRUSEN / NORMAL) via ONNX inference
  • Stage 2: Fluid segmentation (IRF / SRF / PED) with live ONNX dual ensemble
  • UCUS clinical triage score computed end-to-end from raw scan to urgency band

Research-grade plant pathology classification β€” 38 diseases, 54,306 images

  • Results: 99.57% Test Accuracy Β· 99.48% Macro F1 Β· McNemar p = 3.27 Γ— 10⁻¹⁸²
  • Architecture: EfficientNetV2S Β· two-stage transfer learning Β· TFLite float16 (~45 MB)

TensorFlow EfficientNetV2S TFLite Streamlit UMAP HuggingFace


Automated content creation pipeline with RAG + fine-tuned Llama-2

  • ~70% reduction in manual writing time Β· LangChain RAG Β· vector store retrieval

LangChain RAG Llama-2 Python


πŸ› οΈ Tech Stack

Languages & Frameworks

Python C++ CUDA SQL

AI / ML / CV

PyTorch TensorFlow HuggingFace OpenCV scikit-learn XGBoost

MLOps & Cloud

AWS Azure Docker FastAPI Streamlit

Data & Explainability

Pandas NumPy SHAP Tableau


πŸ† Certifications

Certification Issuer Badge
Oracle Generative AI Professional Oracle Oracle
AWS Solutions Architect Amazon Web Services AWS
Azure Fundamentals (AZ-900) Microsoft Azure
Oracle AI Vector Search Oracle Oracle

πŸ”— View all credentials on Credly β†’


πŸ’Ό Experience

πŸ”· IBM β€” AI/ML Intern (Summer 2025)

LLMs & Transformer architectures β€” fine-tuning, deployment, and prompt engineering at enterprise scale

πŸ”· IIT Kanpur β€” Deep Learning Intern (May–June 2023)

Retinal disease detection with DL + AWS cloud infrastructure

πŸ”· MedTourEasy β€” Data Analyst (October 2022)

Healthcare data analytics and reporting


πŸ“Š GitHub Stats


🎯 Current Focus

  • πŸ”¬ OCT Fluid Segmentation β€” arXiv preprint submission (targeting cs.CV / eess.IV)
  • πŸ”¬ OCT Classification β€” arXiv preprint submission
  • πŸŽ“ PhD Applications β€” targeting funded positions at TU Munich Β· DKFZ Β· FAU (Sept/Oct 2026)
  • πŸ“– MSc Dissertation β€” Newcastle University (2025–26)

πŸ”¬ Research Interests

Medical Image Analysis Β Computer Vision Β Generative AI Β Clinical AI Safety Uncertainty Quantification Β Explainable AI (XAI) Β Transformer Architectures Β MLOps


πŸ“¬ Let's Connect

Open to research collaborations, PhD discussions, and interesting problems in medical AI.

Email Portfolio LinkedIn HuggingFace


"Building AI that doctors can trust and researchers can build on."

Pinned Loading

  1. Human-Eye-Disease-Prediction Human-Eye-Disease-Prediction Public

    Hybrid CNN-Transformer framework (EfficientNetV2L + 4Γ— Multi-Head Attention + XGBoost) for four-class retinal OCT classification. 95.43% Β± 0.27% accuracy, AUC 0.9941 Β± 0.0006 across 5 seeds. Integr…

    HTML 1

  2. Plant-Disease-Prediction Plant-Disease-Prediction Public

    Deep Learning-based plant pathology diagnostic tool. Uses Convolutional Neural Networks (CNN) to classify 38 plant disease categories with high confidence.

    Jupyter Notebook 1

  3. AI-Powered-Social-Media-Post-Caption-Generator AI-Powered-Social-Media-Post-Caption-Generator Public

    Python 1

  4. Give-Life-Predict-Blood-Donations Give-Life-Predict-Blood-Donations Public

    Jupyter Notebook

  5. Animesh-Kr Animesh-Kr Public

  6. oct-fluid-segmentation oct-fluid-segmentation Public

    Attention-Guided TransUNet for multi-class retinal fluid segmentation in OCT with MC Dropout uncertainty quantification

    Python