PYTHON-5676 Consolidate Command Execution Logic#2789

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aclark4life wants to merge 3 commits intomongodb:masterfrom

aclark4life:PYTHON-5676

Commits on May 1, 2026

PYTHON-5676 Phase 1: Remove dead legacy OP_QUERY code from run_operation()
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PYTHON-5676 Phase 2: Extract shared APM/logging helpers
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Commits on May 2, 2026

PYTHON-5676 Phase 3: Unify run_operation() with network.command()
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