Add Neuropixels saturation levels estimation from probe table/metadata#434
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alejoe91 wants to merge 3 commits intoSpikeInterface:mainfrom
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Add Neuropixels saturation levels estimation from probe table/metadata#434alejoe91 wants to merge 3 commits intoSpikeInterface:mainfrom
alejoe91 wants to merge 3 commits intoSpikeInterface:mainfrom
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Is this related to the neo PR? I will take a look tomorrow. |
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Not really, it's more related to this: SpikeInterface/spikeinterface#4539 Basically, from the probetable and metadata files we can figure out the saturation levels for Neuropixels probes. This will allow to automatically set saturation thresholds for the new SI function to detect and remove artifacts! |
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This PR estimates ap/lf gain and saturation levels from the ProbeTable and metadata.
For NP2.x and up, this is done directly in the
build_neuropixels_probe, since the gain is fixed and in the ProbeTable.For NP1.x, the ap and lf gains are retrieved from the imro header/table for SpikeGLX and from the settings file in OpenEphys.