Hi,
Is it possible to make a converter for SAGE: https://github.com/lazear/sage. It produces an output in similar output to MSFragger. I attached two small results file, one from a qtof and one from an orbitrap, and an example .json that was used to configure a search. I edited the qtof .tsv to include modifications, decoys, and mulitple protein hits. Sage takes mgf and mzml spectrum files and .fasta sequence files. For other downstream analysis, sage_discriminant_score is typically the most useful for ranking the results.
Let me know if you need anything else, or if I can help out in anyway.
Thanks!
Mike
thermo.sage.results.tsv
qtof.human.sage.results.tsv
sage_example.json
Hi,
Is it possible to make a converter for SAGE: https://github.com/lazear/sage. It produces an output in similar output to MSFragger. I attached two small results file, one from a qtof and one from an orbitrap, and an example .json that was used to configure a search. I edited the qtof .tsv to include modifications, decoys, and mulitple protein hits. Sage takes mgf and mzml spectrum files and .fasta sequence files. For other downstream analysis, sage_discriminant_score is typically the most useful for ranking the results.
Let me know if you need anything else, or if I can help out in anyway.
Thanks!
Mike
thermo.sage.results.tsv
qtof.human.sage.results.tsv
sage_example.json