viprs/pyproject.toml at master · shz9/viprs · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
[build-system]
# Minimum requirements for the build system to execute.
requires = [
    "setuptools",
    "wheel",
    "cython",
    "extension-helpers",
    "numpy>=2,<3",
    "scipy<1.17",
    "pkgconfig"
]
build-backend = "setuptools.build_meta"


[project]
name = "viprs"
description = "Variational Inference of Polygenic Risk Scores (VIPRS)"
readme = "README.md"
requires-python = ">=3.10,<3.14"
dynamic = ["version"]
authors = [
    { name = "Shadi Zabad", email = "[email protected]" },
]
classifiers = [
    "Programming Language :: Python",
    "Intended Audience :: Developers",
    "Intended Audience :: Science/Research",
    "Topic :: Software Development :: Libraries :: Python Modules",
    "Topic :: Scientific/Engineering",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
]
dependencies = [
    "numpy>=2,<3",
    "scipy<1.17",
    "joblib",
    "magenpy>=0.1.5",
    "pandas",
    "psutil",
    "scikit-learn",
    "statsmodels",
    "tqdm",
    "zarr<3",
]

[project.optional-dependencies]
opt = [
    "matplotlib",
    "seaborn",
    "scikit-optimize",
    "huggingface_hub",
    "s3fs",
]
test = [
    "pytest",
]
docs = [
    "mkdocs",
    "mkdocstrings-python",
    "mkdocs-material",
    "mkdocs-material-extensions",
]

[project.urls]
Homepage = "https://github.com/shz9/viprs"
Repository = "https://github.com/shz9/viprs"
Documentation = "https://shz9.github.io/viprs/"


[tool.setuptools.dynamic]
version = { attr = "viprs._version.__version__" }


[tool.cibuildwheel]
test-extras = "test"
test-command = "pytest {project}/tests"
# Optional
build-verbosity = 1