bsseq/DESCRIPTION at master · sandrews5/bsseq · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
Package: bsseq
Version: 1.13.6
Encoding: UTF-8
Title: Analyze, manage and store bisulfite sequencing data
Description: A collection of tools for analyzing and visualizing bisulfite
    sequencing data.
Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("aut", "cre"),
    email = "[email protected]"),
    person("Peter", "Hickey", role = "aut", email = "[email protected]"),
	person(c("Shan", "V."), "Andrews", role = "ctb", email = "[email protected]"))
Depends:
    R (>= 3.3),
    methods,
    BiocGenerics,
    GenomicRanges (>= 1.23.7),
    SummarizedExperiment (>= 0.1.1),
    parallel
Imports:
    IRanges (>= 2.5.17),
    GenomeInfoDb,
    scales,
    stats,
    graphics,
    Biobase,
    locfit,
    gtools,
    data.table,
    S4Vectors,
    R.utils (>= 2.0.0),
    matrixStats (>= 0.50.0),
    permute,
    limma,
    DelayedArray,
    HDF5Array
Suggests:
    RUnit,
    bsseqData,
    BiocStyle,
    knitr,
Collate:
    utils.R
    hasGRanges.R
    BSseq_class.R
    BSseqTstat_class.R
    BSseq_utils.R
    combine.R
    read.bsmooth.R
    read.bismark.R
    BSmooth.R
    BSmooth.tstat.R
    dmrFinder.R
    gof_stats.R
    plotting.R
    fisher.R
    permutations.R
    BSmooth.fstat.R
    BSseqStat_class.R
    getStats.R
  	getSex.R
    hdf5_utils.R
    combine_utils.R
    DelayedArray_utils.R
License: Artistic-2.0
VignetteBuilder: knitr
URL: https://github.com/kasperdanielhansen/bsseq
LazyData: yes
LazyDataCompression: xz
BugReports: https://github.com/kasperdanielhansen/bsseq/issues
biocViews: DNAMethylation