diff --git a/docs/_quarto.yml b/docs/_quarto.yml
index 8e39c5f..66519fa 100644
--- a/docs/_quarto.yml
+++ b/docs/_quarto.yml
@@ -44,6 +44,7 @@ website:
       - subworkflows/assembly/assembly_rattle.qmd
       - subworkflows/assembly/assembly_rnabloom2.qmd
       - subworkflows/assembly/assembly_stringtie2.qmd
+      - subworkflows/assembly/assembly_stringtie3.qmd
     - section: Haplotagging
       contents:
       - subworkflows/haplotagging/haplotagging_flair-longshot.qmd
diff --git a/docs/subworkflows/index.qmd b/docs/subworkflows/index.qmd
index b6d27bf..dd7ddb2 100644
--- a/docs/subworkflows/index.qmd
+++ b/docs/subworkflows/index.qmd
@@ -49,6 +49,7 @@ nexus run --nf-workflow <subworkflow>.nf \
 | [rattle](assembly/assembly_rattle.qmd) | long-read RNA isoform clustering |
 | [rnabloom2](assembly/assembly_rnabloom2.qmd) | long-read RNA assembly |
 | [stringtie2](assembly/assembly_stringtie2.qmd) | transcript assembly |
+| [stringtie3](assembly/assembly_stringtie3.qmd) | long-read transcript assembly |
 
 : {.striped .hover}
 
diff --git a/nextflow/nexus_v0.2.0_nextflow_slurm.config b/nextflow/nexus_v0.2.0_nextflow_slurm.config
index 4d2404e..aa13d8b 100644
--- a/nextflow/nexus_v0.2.0_nextflow_slurm.config
+++ b/nextflow/nexus_v0.2.0_nextflow_slurm.config
@@ -181,13 +181,13 @@ process {
         time = '1day'
     }
     withLabel: 'deepsomatic' {
-        cpus = 16
-        memory = { retryMemory(64.GB, 256.GB, task.attempt) }
+        cpus = 24
+        memory = { retryMemory(96.GB, 384.GB, task.attempt) }
         time = '14days'
     }
     withLabel: 'deepvariant' {
-        cpus = 16
-        memory = { retryMemory(64.GB, 256.GB, task.attempt) }
+        cpus = 24
+        memory = { retryMemory(96.GB, 384.GB, task.attempt) }
         time = '14days'
     }
     withLabel: 'delly2' {