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Simplify getting started instructions
Removed instructions for creating a symlink to scratch space and validation commands for compute-node from the getting started guide.
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setup/01-getting-started.md

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@@ -20,12 +20,6 @@ cd "$HOME"
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git clone https://github.com/ofuhrer/HPC4WC.git
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```
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If you want direct access to your scratch space from the file browser, create a symlink:
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```bash
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ln -sfn "$SCRATCH" "$HOME/scratch"
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```
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## Install the Course Environment
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Run the setup script from the JupyterLab terminal:
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./setup/HPC4WC_setup.sh
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```
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The script creates a Python virtual environment under `$SCRATCH`, symlinks it as `$HOME/HPC4WC_venv`, registers the `HPC4WC_kernel` Jupyter kernel, and validates the CPU-side Python stack. It also installs a small `srun` wrapper inside the virtual environment so nested `srun -n ...` commands and `%ipcluster start -n ...` work from the single-task JupyterHub allocation. It does not modify `.bashrc`.
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If you need to recreate the environment, or if an older course setup already exists, run:
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```bash
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HPC4WC_FORCE=1 ./setup/HPC4WC_setup.sh
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```
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The script creates a Python virtual environment under `$SCRATCH`, symlinks it as `$HOME/HPC4WC_venv`, registers the `HPC4WC_kernel` Jupyter kernel, and validates the CPU-side Python stack.
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For terminals, activate the environment with:
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If you need to acces the environment from a terminal, activate the environment with:
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```bash
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source "$HOME/activate_hpc4wc.sh"
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```
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It checks NumPy, Matplotlib, MPI through `ipyparallel`, CuPy, GT4Py, and the package versions expected for the course.
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For a compute-node validation from a Santis login node, submit:
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```bash
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cd "$HOME/HPC4WC"
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sbatch setup/validate_on_compute.sh
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```
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Validation logs are written below `$SCRATCH/HPC4WC_validation_logs`.

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