-
Notifications
You must be signed in to change notification settings - Fork 4
Expand file tree
/
Copy pathpubs.json
More file actions
1 lines (1 loc) · 55.3 KB
/
Copy pathpubs.json
File metadata and controls
1 lines (1 loc) · 55.3 KB
1
{"result": [{"DOI": "10.1038/ncomms7717", "Title": "Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe.", "Source": "Nat Commun", "PmcRefCount": 0, "Issue": "", "ISSN": "", "Volume": "6", "FullJournalName": "Nature communications", "RecordStatus": "PubMed - in process", "ESSN": "2041-1723", "ELocationID": "doi: 10.1038/ncomms7717", "Pages": "6717", "PubStatus": "epublish", "AuthorList": ["Kay GL", "Sergeant MJ", "Zhou Z", "Chan JZ", "Millard A", "Quick J", "Szikossy I", "Pap I", "Spigelman M", "Loman NJ", "Achtman M", "Donoghue HD", "Pallen MJ"], "EPubDate": "2015 Apr 7", "PubDate": "2015 Apr 7", "NlmUniqueID": "101528555", "LastAuthor": "Pallen MJ", "ArticleIds": {"pii": "ncomms7717", "medline": [], "pubmed": ["25848958"], "eid": "25848958", "rid": "25848958", "doi": "10.1038/ncomms7717"}, "Item": [], "History": {"medline": ["2015/04/08 06:00"], "received": "2014/10/24 00:00", "accepted": "2015/02/18 00:00", "entrez": "2015/04/08 06:00", "pubmed": ["2015/04/08 06:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2015 Apr 7;6:6717", "PubTypeList": ["Journal Article"], "References": [], "Id": "25848958"}, {"DOI": "10.1038/nmeth.3327", "Title": "Successful test launch for nanopore sequencing.", "Source": "Nat Methods", "PmcRefCount": 0, "Issue": "4", "ISSN": "1548-7091", "Volume": "12", "FullJournalName": "Nature methods", "RecordStatus": "PubMed - in process", "ESSN": "1548-7105", "ELocationID": "doi: 10.1038/nmeth.3327", "Pages": "303-4", "PubStatus": "ppublish", "AuthorList": ["Loman NJ", "Watson M"], "EPubDate": "", "PubDate": "2015 Mar 31", "NlmUniqueID": "101215604", "LastAuthor": "Watson M", "ArticleIds": {"pii": "nmeth.3327", "medline": [], "pubmed": ["25825834"], "eid": "25825834", "rid": "25825834", "doi": "10.1038/nmeth.3327"}, "Item": [], "History": {"medline": ["2015/04/01 06:00"], "entrez": "2015/04/01 06:00", "pubmed": ["2015/04/01 06:00"]}, "LangList": ["English"], "HasAbstract": 0, "SO": "2015 Mar 31;12(4):303-4", "PubTypeList": ["Journal Article"], "References": [], "Id": "25825834"}, {"DOI": "10.1371/journal.pone.0121492", "Title": "Mycobacterial dihydrofolate reductase inhibitors identified using chemogenomic methods and in vitro validation.", "Source": "PLoS One", "PmcRefCount": 0, "Issue": "3", "ISSN": "", "Volume": "10", "FullJournalName": "PloS one", "RecordStatus": "PubMed - in process", "ESSN": "1932-6203", "ELocationID": "doi: 10.1371/journal.pone.0121492", "Pages": "e0121492", "PubStatus": "", "AuthorList": ["Mugumbate G", "Abrahams KA", "Cox JA", "Papadatos G", "van Westen G", "Leli\u00e8vre J", "Calus ST", "Loman NJ", "Ballell L", "Barros D", "Overington JP", "Besra GS"], "EPubDate": "2015 Mar 23", "PubDate": "2015", "NlmUniqueID": "101285081", "LastAuthor": "Besra GS", "ArticleIds": {"pii": "PONE-D-14-54393", "medline": [], "pubmed": ["25799414"], "eid": "25799414", "pmc": "PMC4370846", "rid": "25799414", "pmcid": "pmc-id: PMC4370846;", "doi": "10.1371/journal.pone.0121492"}, "Item": [], "History": {"received": "2014/12/04 00:00", "medline": ["2015/03/24 06:00"], "pubmed": ["2015/03/24 06:00"], "epublish": "2015/03/23 00:00", "accepted": "2015/02/01 00:00", "entrez": "2015/03/24 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2015;10(3):e0121492", "PubTypeList": ["Journal Article"], "References": [], "Id": "25799414"}, {"DOI": "10.1371/journal.pone.0113568", "Title": "Biochemical and structural characterization of mycobacterial aspartyl-tRNA synthetase AspS, a promising TB drug target.", "Source": "PLoS One", "PmcRefCount": 0, "Issue": "11", "ISSN": "", "Volume": "9", "FullJournalName": "PloS one", "RecordStatus": "PubMed - in process", "ESSN": "1932-6203", "ELocationID": "doi: 10.1371/journal.pone.0113568", "Pages": "e113568", "PubStatus": "", "AuthorList": ["Gurcha SS", "Usha V", "Cox JA", "F\u00fctterer K", "Abrahams KA", "Bhatt A", "Alderwick LJ", "Reynolds RC", "Loman NJ", "Nataraj V", "Alemparte C", "Barros D", "Lloyd AJ", "Ballell L", "Hobrath JV", "Besra GS"], "EPubDate": "2014 Nov 19", "PubDate": "2014", "NlmUniqueID": "101285081", "LastAuthor": "Besra GS", "ArticleIds": {"pii": "PONE-D-14-32570", "medline": [], "pubmed": ["25409504"], "eid": "25409504", "pmc": "PMC4237437", "rid": "25409504", "pmcid": "pmc-id: PMC4237437;", "doi": "10.1371/journal.pone.0113568"}, "Item": [], "History": {"received": "2014/07/21 00:00", "medline": ["2014/11/20 06:00"], "pubmed": ["2014/11/20 06:00"], "epublish": "2014/11/19 00:00", "accepted": "2014/10/13 00:00", "entrez": "2014/11/20 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2014;9(11):e113568", "PubTypeList": ["Journal Article"], "References": [], "Id": "25409504"}, {"DOI": "10.1186/s12915-014-0087-z", "Title": "Reagent and laboratory contamination can critically impact sequence-based microbiome analyses.", "Source": "BMC Biol", "PmcRefCount": 5, "Issue": "", "ISSN": "", "Volume": "12", "FullJournalName": "BMC biology", "RecordStatus": "PubMed - in process", "ESSN": "1741-7007", "ELocationID": "doi: 10.1186/s12915-014-0087-z", "Pages": "87", "PubStatus": "epublish", "AuthorList": ["Salter SJ", "Cox MJ", "Turek EM", "Calus ST", "Cookson WO", "Moffatt MF", "Turner P", "Parkhill J", "Loman NJ", "Walker AW"], "EPubDate": "2014 Nov 12", "PubDate": "2014 Nov 12", "NlmUniqueID": "101190720", "LastAuthor": "Walker AW", "ArticleIds": {"pii": "s12915-014-0087-z", "medline": [], "pubmed": ["25387460"], "eid": "25387460", "pmc": "PMC4228153", "rid": "25387460", "pmcid": "pmc-id: PMC4228153;", "doi": "10.1186/s12915-014-0087-z"}, "Item": [], "History": {"received": "2014/07/15 00:00", "medline": ["2014/11/13 06:00"], "pubmed": ["2014/11/13 06:00"], "aheadofprint": "2014/11/12 00:00", "accepted": "2014/10/13 00:00", "entrez": "2014/11/13 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2014 Nov 12;12:87", "PubTypeList": ["Journal Article"], "References": [], "Id": "25387460"}, {"DOI": "10.1186/2047-217X-3-22", "Title": "A reference bacterial genome dataset generated on the MinION\u2122 portable single-molecule nanopore sequencer.", "Source": "Gigascience", "PmcRefCount": 3, "Issue": "", "ISSN": "", "Volume": "3", "FullJournalName": "GigaScience", "RecordStatus": "PubMed", "ESSN": "2047-217X", "ELocationID": "doi: 10.1186/2047-217X-3-22", "Pages": "22", "PubStatus": "", "AuthorList": ["Quick J", "Quinlan AR", "Loman NJ"], "EPubDate": "2014 Oct 20", "PubDate": "2014", "NlmUniqueID": "101596872", "LastAuthor": "Loman NJ", "ArticleIds": {"pii": "2047-217X-3-22", "medline": [], "pubmed": ["25386338"], "eid": "25386338", "pmc": "PMC4226419", "rid": "25386338", "pmcid": "pmc-id: PMC4226419;", "doi": "10.1186/2047-217X-3-22"}, "Item": [], "History": {"received": "2014/09/26 00:00", "medline": ["2014/11/12 06:01"], "pubmed": ["2014/11/12 06:00"], "epublish": "2014/10/20 00:00", "accepted": "2014/10/14 00:00", "entrez": "2014/11/12 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2014;3:22", "PubTypeList": ["Journal Article"], "References": ["Gigascience. 2015;4:6. PMID: 25695306"], "Id": "25386338"}, {"DOI": "10.1136/bmjopen-2014-006278", "Title": "Seeking the source of Pseudomonas aeruginosa infections in a recently opened hospital: an observational study using whole-genome sequencing.", "Source": "BMJ Open", "PmcRefCount": 0, "Issue": "11", "ISSN": "", "Volume": "4", "FullJournalName": "BMJ open", "RecordStatus": "PubMed - in process", "ESSN": "2044-6055", "ELocationID": "doi: 10.1136/bmjopen-2014-006278", "Pages": "e006278", "PubStatus": "epublish", "AuthorList": ["Quick J", "Cumley N", "Wearn CM", "Niebel M", "Constantinidou C", "Thomas CM", "Pallen MJ", "Moiemen NS", "Bamford A", "Oppenheim B", "Loman NJ"], "EPubDate": "2014 Nov 4", "PubDate": "2014 Nov 4", "NlmUniqueID": "101552874", "LastAuthor": "Loman NJ", "ArticleIds": {"pii": "bmjopen-2014-006278", "medline": [], "pubmed": ["25371418"], "eid": "25371418", "pmc": "PMC4225241", "rid": "25371418", "pmcid": "pmc-id: PMC4225241;", "doi": "10.1136/bmjopen-2014-006278"}, "Item": [], "History": {"medline": ["2014/11/06 06:00"], "entrez": "2014/11/06 06:00", "pubmed": ["2014/11/06 06:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2014 Nov 4;4(11):e006278", "PubTypeList": ["Journal Article"], "References": [], "Id": "25371418"}, {"DOI": "10.1038/nmeth.3103", "Title": "Binning metagenomic contigs by coverage and composition.", "Source": "Nat Methods", "PmcRefCount": 2, "Issue": "11", "ISSN": "1548-7091", "Volume": "11", "FullJournalName": "Nature methods", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1548-7105", "ELocationID": "doi: 10.1038/nmeth.3103", "Pages": "1144-6", "PubStatus": "ppublish+epublish", "AuthorList": ["Alneberg J", "Bjarnason BS", "de Bruijn I", "Schirmer M", "Quick J", "Ijaz UZ", "Lahti L", "Loman NJ", "Andersson AF", "Quince C"], "EPubDate": "2014 Sep 14", "PubDate": "2014 Nov", "NlmUniqueID": "101215604", "LastAuthor": "Quince C", "ArticleIds": {"pii": "nmeth.3103", "medline": [], "pubmed": ["25218180"], "eid": "25218180", "rid": "25218180", "doi": "10.1038/nmeth.3103"}, "Item": [], "History": {"received": "2013/12/02 00:00", "medline": ["2015/02/28 06:00"], "pubmed": ["2014/09/15 06:00"], "aheadofprint": "2014/09/14 00:00", "accepted": "2014/08/18 00:00", "entrez": "2014/09/15 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2014 Nov;11(11):1144-6", "PubTypeList": ["Journal Article"], "References": [], "Id": "25218180"}, {"DOI": "10.1038/ncomms5780", "Title": "Pseudomonas aeruginosa adaptation in the nasopharyngeal reservoir leads to migration and persistence in the lungs.", "Source": "Nat Commun", "PmcRefCount": 0, "Issue": "", "ISSN": "", "Volume": "5", "FullJournalName": "Nature communications", "RecordStatus": "PubMed - in process", "ESSN": "2041-1723", "ELocationID": "doi: 10.1038/ncomms5780", "Pages": "4780", "PubStatus": "epublish", "AuthorList": ["Fothergill JL", "Neill DR", "Loman N", "Winstanley C", "Kadioglu A"], "EPubDate": "2014 Sep 2", "PubDate": "2014 Sep 2", "NlmUniqueID": "101528555", "LastAuthor": "Kadioglu A", "ArticleIds": {"pii": "ncomms5780", "medline": [], "pubmed": ["25179232"], "eid": "25179232", "rid": "25179232", "doi": "10.1038/ncomms5780"}, "Item": [], "History": {"medline": ["2014/09/03 06:00"], "received": "2014/03/07 00:00", "accepted": "2014/07/23 00:00", "entrez": "2014/09/03 06:00", "pubmed": ["2014/09/03 06:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2014 Sep 2;5:4780", "PubTypeList": ["Journal Article"], "References": [], "Id": "25179232"}, {"DOI": "10.1093/bioinformatics/btu555", "Title": "Poretools: a toolkit for analyzing nanopore sequence data.", "Source": "Bioinformatics", "PmcRefCount": 2, "Issue": "23", "ISSN": "1367-4803", "Volume": "30", "FullJournalName": "Bioinformatics (Oxford, England)", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1367-4811", "ELocationID": "doi: 10.1093/bioinformatics/btu555", "Pages": "3399-401", "PubStatus": "ppublish+epublish", "AuthorList": ["Loman NJ", "Quinlan AR"], "EPubDate": "2014 Aug 20", "PubDate": "2014 Dec 1", "NlmUniqueID": "9808944", "LastAuthor": "Quinlan AR", "ArticleIds": {"pii": "btu555", "medline": [], "pubmed": ["25143291"], "eid": "25143291", "pmc": "PMC4296151", "rid": "25143291", "pmcid": "pmc-id: PMC4296151;", "doi": "10.1093/bioinformatics/btu555"}, "Item": [], "History": {"medline": ["2015/02/24 06:00"], "entrez": "2014/08/22 06:00", "aheadofprint": "2014/08/20 00:00", "pubmed": ["2014/08/22 06:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2014 Dec 1;30(23):3399-401", "PubTypeList": ["Journal Article"], "References": ["Nat Methods. 2015 Jan;12(1):12-3. PMID: 25699315"], "Id": "25143291"}, {"DOI": "10.1111/mmi.12704", "Title": "Characterization of mutations in the PAS domain of the EvgS sensor kinase selected by laboratory evolution for acid resistance in Escherichia coli.", "Source": "Mol Microbiol", "PmcRefCount": 2, "Issue": "5", "ISSN": "0950-382X", "Volume": "93", "FullJournalName": "Molecular microbiology", "RecordStatus": "PubMed - in process", "ESSN": "1365-2958", "ELocationID": "doi: 10.1111/mmi.12704", "Pages": "911-27", "PubStatus": "ppublish+epublish", "AuthorList": ["Johnson MD", "Bell J", "Clarke K", "Chandler R", "Pathak P", "Xia Y", "Marshall RL", "Weinstock GM", "Loman NJ", "Winn PJ", "Lund PA"], "EPubDate": "2014 Jul 24", "PubDate": "2014 Sep", "NlmUniqueID": "8712028", "LastAuthor": "Lund PA", "ArticleIds": {"medline": [], "pubmed": ["24995530"], "eid": "24995530", "pmc": "PMC4283999", "rid": "24995530", "pmcid": "pmc-id: PMC4283999;", "doi": "10.1111/mmi.12704"}, "Item": [], "History": {"medline": ["2014/07/06 06:00"], "accepted": "2014/07/02 00:00", "entrez": "2014/07/05 06:00", "aheadofprint": "2014/07/24 00:00", "pubmed": ["2014/07/06 06:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2014 Sep;93(5):911-27", "PubTypeList": ["Journal Article"], "References": [], "Id": "24995530"}, {"DOI": "10.1097/MIB.0000000000000079", "Title": "Role of Faecalibacterium prausnitzii in Crohn's Disease: friend, foe, or does not really matter?", "Source": "Inflamm Bowel Dis", "PmcRefCount": 0, "Issue": "7", "ISSN": "1078-0998", "Volume": "20", "FullJournalName": "Inflammatory bowel diseases", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1536-4844", "ELocationID": "doi: 10.1097/MIB.0000000000000079", "Pages": "E18-9", "PubStatus": "ppublish", "AuthorList": ["Gerasimidis K", "Russell R", "Hansen R", "Quince C", "Loman N", "Bertz M", "Hanske L", "Blaut M", "McGrogan P", "Edwards CA"], "EPubDate": "", "PubDate": "2014 Jul", "NlmUniqueID": "9508162", "LastAuthor": "Edwards CA", "ArticleIds": {"rid": "24859302", "medline": [], "pubmed": ["24859302"], "eid": "24859302", "doi": "10.1097/MIB.0000000000000079"}, "Item": [], "History": {"medline": ["2015/02/20 06:00"], "entrez": "2014/05/27 06:00", "pubmed": ["2014/05/27 06:00"]}, "LangList": ["English"], "HasAbstract": 0, "SO": "2014 Jul;20(7):E18-9", "PubTypeList": ["Comment", "Letter"], "References": ["Inflamm Bowel Dis. 2014 May;20(5):861-71. PMID: 24651582", "Inflamm Bowel Dis. 2014 Jul;20(7):E18. PMID: 24859301"], "Id": "24859302"}, {"DOI": "10.1128/genomeA.00355-14", "Title": "Draft Genome Sequence of Elizabethkingia meningoseptica Isolated from a Traumatic Wound.", "Source": "Genome Announc", "PmcRefCount": 3, "Issue": "3", "ISSN": "", "Volume": "2", "FullJournalName": "Genome announcements", "RecordStatus": "PubMed", "ESSN": "2169-8287", "ELocationID": "pii: e00355-14. doi: 10.1128/genomeA.00355-14", "Pages": "", "PubStatus": "epublish", "AuthorList": ["Quick J", "Constantinidou C", "Pallen MJ", "Oppenheim B", "Loman NJ"], "EPubDate": "2014 May 8", "PubDate": "2014 May 8", "NlmUniqueID": "101595808", "LastAuthor": "Loman NJ", "ArticleIds": {"pii": "2/3/e00355-14", "medline": [], "pubmed": ["24812216"], "eid": "24812216", "pmc": "PMC4014684", "rid": "24812216", "pmcid": "pmc-id: PMC4014684;", "doi": "10.1128/genomeA.00355-14"}, "Item": [], "History": {"medline": ["2014/05/09 06:01"], "entrez": "2014/05/10 06:00", "pubmed": ["2014/05/09 06:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2014 May 8;2(3)", "PubTypeList": ["Journal Article"], "References": [], "Id": "24812216"}, {"DOI": "10.1371/journal.pone.0083158", "Title": "A cross-sectional survey of bacterial species in plaque from client owned dogs with healthy gingiva, gingivitis or mild periodontitis.", "Source": "PLoS One", "PmcRefCount": 2, "Issue": "12", "ISSN": "", "Volume": "8", "FullJournalName": "PloS one", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1932-6203", "ELocationID": "doi: 10.1371/journal.pone.0083158", "Pages": "e83158", "PubStatus": "", "AuthorList": ["Davis IJ", "Wallis C", "Deusch O", "Colyer A", "Milella L", "Loman N", "Harris S"], "EPubDate": "2013 Dec 13", "PubDate": "2013", "NlmUniqueID": "101285081", "LastAuthor": "Harris S", "ArticleIds": {"pii": "PONE-D-13-30835", "medline": [], "pubmed": ["24349448"], "eid": "24349448", "pmc": "PMC3862762", "rid": "24349448", "pmcid": "pmc-id: PMC3862762;", "doi": "10.1371/journal.pone.0083158"}, "Item": [], "History": {"received": "2013/07/25 00:00", "medline": ["2015/03/31 06:00"], "pubmed": ["2013/12/19 06:00"], "epublish": "2013/12/13 00:00", "accepted": "2013/10/30 00:00", "entrez": "2013/12/19 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2013;8(12):e83158", "PubTypeList": ["Journal Article"], "References": [], "Id": "24349448"}, {"DOI": "10.1038/nbt.2740", "Title": "So you want to be a computational biologist?", "Source": "Nat Biotechnol", "PmcRefCount": 2, "Issue": "11", "ISSN": "1087-0156", "Volume": "31", "FullJournalName": "Nature biotechnology", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1546-1696", "ELocationID": "doi: 10.1038/nbt.2740", "Pages": "996-8", "PubStatus": "ppublish", "AuthorList": ["Loman N", "Watson M"], "EPubDate": "", "PubDate": "2013 Nov", "NlmUniqueID": "9604648", "LastAuthor": "Watson M", "ArticleIds": {"pii": "nbt.2740", "medline": [], "pubmed": ["24213777"], "eid": "24213777", "rid": "24213777", "doi": "10.1038/nbt.2740"}, "Item": [], "History": {"medline": ["2014/10/25 06:00"], "entrez": "2013/11/12 06:00", "pubmed": ["2013/11/12 06:00"]}, "LangList": ["English"], "HasAbstract": 0, "SO": "2013 Nov;31(11):996-8", "PubTypeList": ["Journal Article"], "References": [], "Id": "24213777"}, {"Title": "Epidemiological investigation of Pseudomonas aeruginosa isolates from a six-year-long hospital outbreak using high-throughput whole genome sequencing.", "Source": "Euro Surveill", "PmcRefCount": 4, "Issue": "42", "ISSN": "1025-496X", "Volume": "18", "FullJournalName": "Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1560-7917", "ELocationID": "pii: 20611", "Pages": "", "PubStatus": "epublish", "AuthorList": ["Snyder LA", "Loman NJ", "Faraj LA", "Levi K", "Weinstock G", "Boswell TC", "Pallen MJ", "Ala'Aldeen DA"], "EPubDate": "2013 Oct 17", "PubDate": "2013 Oct 17", "NlmUniqueID": "100887452", "LastAuthor": "Ala'Aldeen DA", "ArticleIds": {"rid": "24176582", "medline": [], "pubmed": ["24176582"], "eid": "24176582"}, "HasAbstract": 1, "History": {"medline": ["2014/01/08 06:00"], "entrez": "2013/11/02 06:00", "pubmed": ["2013/11/02 06:00"]}, "LangList": ["English"], "Item": [], "SO": "2013 Oct 17;18(42)", "PubTypeList": ["Journal Article"], "References": [], "Id": "24176582"}, {"DOI": "10.1371/journal.ppat.1003461", "Title": "Extreme genetic fragility of the HIV-1 capsid.", "Source": "PLoS Pathog", "PmcRefCount": 14, "Issue": "6", "ISSN": "1553-7366", "Volume": "9", "FullJournalName": "PLoS pathogens", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1553-7374", "ELocationID": "doi: 10.1371/journal.ppat.1003461", "Pages": "e1003461", "PubStatus": "ppublish+epublish", "AuthorList": ["Rihn SJ", "Wilson SJ", "Loman NJ", "Alim M", "Bakker SE", "Bhella D", "Gifford RJ", "Rixon FJ", "Bieniasz PD"], "EPubDate": "2013 Jun 20", "PubDate": "2013", "NlmUniqueID": "101238921", "LastAuthor": "Bieniasz PD", "ArticleIds": {"pii": "PPATHOGENS-D-13-00154", "medline": [], "pubmed": ["23818857"], "eid": "23818857", "pmc": "PMC3688543", "rid": "23818857", "pmcid": "pmc-id: PMC3688543;", "doi": "10.1371/journal.ppat.1003461"}, "Item": [], "History": {"received": "2013/01/15 00:00", "medline": ["2014/01/18 06:00"], "pubmed": ["2013/07/03 06:00"], "epublish": "2013/06/20 00:00", "accepted": "2013/05/11 00:00", "entrez": "2013/07/03 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2013;9(6):e1003461", "PubTypeList": ["Journal Article"], "References": [], "Id": "23818857"}, {"DOI": "10.1371/journal.pone.0064731", "Title": "Clonal expansion within pneumococcal serotype 6C after use of seven-valent vaccine.", "Source": "PLoS One", "PmcRefCount": 1, "Issue": "5", "ISSN": "", "Volume": "8", "FullJournalName": "PloS one", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1932-6203", "ELocationID": "doi: 10.1371/journal.pone.0064731", "Pages": "e64731", "PubStatus": "epublish+ppublish", "AuthorList": ["Loman NJ", "Gladstone RA", "Constantinidou C", "Tocheva AS", "Jefferies JM", "Faust SN", "O'Connor L", "Chan J", "Pallen MJ", "Clarke SC"], "EPubDate": "2013 May 28", "PubDate": "2013", "NlmUniqueID": "101285081", "LastAuthor": "Clarke SC", "ArticleIds": {"pii": "PONE-D-13-03113", "medline": [], "pubmed": ["23724086"], "eid": "23724086", "pmc": "PMC3665553", "rid": "23724086", "pmcid": "pmc-id: PMC3665553;", "doi": "10.1371/journal.pone.0064731"}, "Item": [], "History": {"received": "2013/01/17 00:00", "medline": ["2014/01/11 06:00"], "pubmed": ["2013/06/01 06:00"], "epublish": "2013/05/28 00:00", "accepted": "2013/04/17 00:00", "entrez": "2013/06/01 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2013;8(5):e64731", "PubTypeList": ["Journal Article"], "References": [], "Id": "23724086"}, {"DOI": "10.1371/journal.pone.0060933", "Title": "Tetrahydropyrazolo[1,5-a]pyrimidine-3-carboxamide and N-benzyl-6',7'-dihydrospiro[piperidine-4,4'-thieno[3,2-c]pyran] analogues with bactericidal efficacy against Mycobacterium tuberculosis targeting MmpL3.", "Source": "PLoS One", "PmcRefCount": 10, "Issue": "4", "ISSN": "", "Volume": "8", "FullJournalName": "PloS one", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1932-6203", "ELocationID": "doi: 10.1371/journal.pone.0060933", "Pages": "e60933", "PubStatus": "epublish+ppublish", "AuthorList": ["Remui\u00f1\u00e1n MJ", "P\u00e9rez-Herr\u00e1n E", "Rull\u00e1s J", "Alemparte C", "Mart\u00ednez-Hoyos M", "Dow DJ", "Afari J", "Mehta N", "Esquivias J", "Jim\u00e9nez E", "Ortega-Muro F", "Fraile-Gabald\u00f3n MT", "Spivey VL", "Loman NJ", "Pallen MJ", "Constantinidou C", "Minick DJ", "Cacho M", "Rebollo-L\u00f3pez MJ", "Gonz\u00e1lez C", "Sousa V", "Angulo-Barturen I", "Mendoza-Losana A", "Barros D", "Besra GS", "Ballell L", "Cammack N"], "EPubDate": "2013 Apr 17", "PubDate": "2013", "NlmUniqueID": "101285081", "LastAuthor": "Cammack N", "ArticleIds": {"pii": "PONE-D-12-40750", "medline": [], "pubmed": ["23613759"], "eid": "23613759", "pmc": "PMC3629081", "rid": "23613759", "pmcid": "pmc-id: PMC3629081;", "doi": "10.1371/journal.pone.0060933"}, "Item": [], "History": {"received": "2012/12/21 00:00", "medline": ["2013/11/12 06:00"], "pubmed": ["2013/04/25 06:00"], "epublish": "2013/04/17 00:00", "accepted": "2013/03/04 00:00", "entrez": "2013/04/25 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2013;8(4):e60933", "PubTypeList": ["Journal Article"], "References": [], "Id": "23613759"}, {"DOI": "10.1001/jama.2013.3231", "Title": "A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-toxigenic Escherichia coli O104:H4.", "Source": "JAMA", "PmcRefCount": 34, "Issue": "14", "ISSN": "0098-7484", "Volume": "309", "FullJournalName": "JAMA", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1538-3598", "ELocationID": "doi: 10.1001/jama.2013.3231", "Pages": "1502-10", "PubStatus": "ppublish", "AuthorList": ["Loman NJ", "Constantinidou C", "Christner M", "Rohde H", "Chan JZ", "Quick J", "Weir JC", "Quince C", "Smith GP", "Betley JR", "Aepfelbacher M", "Pallen MJ"], "EPubDate": "", "PubDate": "2013 Apr 10", "NlmUniqueID": "7501160", "LastAuthor": "Pallen MJ", "ArticleIds": {"pii": "1677374", "medline": [], "pubmed": ["23571589"], "eid": "23571589", "rid": "23571589", "doi": "10.1001/jama.2013.3231"}, "Item": [], "History": {"medline": ["2013/04/12 06:00"], "entrez": "2013/04/11 06:00", "pubmed": ["2013/04/11 06:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2013 Apr 10;309(14):1502-10", "PubTypeList": ["Journal Article"], "References": ["JAMA. 2013 Apr 10;309(14):1531-2. PMID: 23571595"], "Id": "23571589"}, {"DOI": "10.1099/jmm.0.054841-0", "Title": "Clusters of genetically similar isolates of Pseudomonas aeruginosa from multiple hospitals in the UK.", "Source": "J Med Microbiol", "PmcRefCount": 3, "Issue": "Pt 7", "ISSN": "0022-2615", "Volume": "62", "FullJournalName": "Journal of medical microbiology", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1473-5644", "ELocationID": "doi: 10.1099/jmm.0.054841-0", "Pages": "988-1000", "PubStatus": "ppublish+epublish", "AuthorList": ["Martin K", "Baddal B", "Mustafa N", "Perry C", "Underwood A", "Constantidou C", "Loman N", "Kenna DT", "Turton JF"], "EPubDate": "2013 Apr 4", "PubDate": "2013 Jul", "NlmUniqueID": "0224131", "LastAuthor": "Turton JF", "ArticleIds": {"pii": "jmm.0.054841-0", "medline": [], "pubmed": ["23558134"], "eid": "23558134", "rid": "23558134", "doi": "10.1099/jmm.0.054841-0"}, "Item": [], "History": {"medline": ["2013/08/21 06:00"], "entrez": "2013/04/06 06:00", "aheadofprint": "2013/04/04 00:00", "pubmed": ["2013/04/06 06:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2013 Jul;62(Pt 7):988-1000", "PubTypeList": ["Journal Article"], "References": [], "Id": "23558134"}, {"DOI": "10.1186/1471-2180-12-302", "Title": "Defining bacterial species in the genomic era: insights from the genus Acinetobacter.", "Source": "BMC Microbiol", "PmcRefCount": 14, "Issue": "", "ISSN": "", "Volume": "12", "FullJournalName": "BMC microbiology", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1471-2180", "ELocationID": "doi: 10.1186/1471-2180-12-302", "Pages": "302", "PubStatus": "epublish", "AuthorList": ["Chan JZ", "Halachev MR", "Loman NJ", "Constantinidou C", "Pallen MJ"], "EPubDate": "2012 Dec 23", "PubDate": "2012 Dec 23", "NlmUniqueID": "100966981", "LastAuthor": "Pallen MJ", "ArticleIds": {"pii": "1471-2180-12-302", "medline": [], "pubmed": ["23259572"], "eid": "23259572", "pmc": "PMC3556118", "rid": "23259572", "pmcid": "pmc-id: PMC3556118;", "doi": "10.1186/1471-2180-12-302"}, "Item": [], "History": {"received": "2012/07/31 00:00", "medline": ["2013/06/12 06:00"], "pubmed": ["2012/12/25 06:00"], "aheadofprint": "2012/12/23 00:00", "accepted": "2012/12/18 00:00", "entrez": "2012/12/25 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2012 Dec 23;12:302", "PubTypeList": ["Journal Article"], "References": [], "Id": "23259572"}, {"DOI": "10.1038/nrmicro2850", "Title": "High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity.", "Source": "Nat Rev Microbiol", "PmcRefCount": 62, "Issue": "9", "ISSN": "1740-1526", "Volume": "10", "FullJournalName": "Nature reviews. Microbiology", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1740-1534", "ELocationID": "doi: 10.1038/nrmicro2850", "Pages": "599-606", "PubStatus": "ppublish+epublish", "AuthorList": ["Loman NJ", "Constantinidou C", "Chan JZ", "Halachev M", "Sergeant M", "Penn CW", "Robinson ER", "Pallen MJ"], "EPubDate": "2012 Aug 6", "PubDate": "2012 Sep", "NlmUniqueID": "101190261", "LastAuthor": "Pallen MJ", "ArticleIds": {"pii": "nrmicro2850", "medline": [], "pubmed": ["22864262"], "eid": "22864262", "rid": "22864262", "doi": "10.1038/nrmicro2850"}, "Item": [], "History": {"medline": ["2012/10/24 06:00"], "entrez": "2012/08/07 06:00", "aheadofprint": "2012/08/06 00:00", "pubmed": ["2012/08/07 06:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2012 Sep;10(9):599-606", "PubTypeList": ["Journal Article", "Review"], "References": [], "Id": "22864262"}, {"DOI": "10.1038/nbt.2198", "Title": "Performance comparison of benchtop high-throughput sequencing platforms.", "Source": "Nat Biotechnol", "PmcRefCount": 186, "Issue": "5", "ISSN": "1087-0156", "Volume": "30", "FullJournalName": "Nature biotechnology", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1546-1696", "ELocationID": "doi: 10.1038/nbt.2198", "Pages": "434-9", "PubStatus": "ppublish", "AuthorList": ["Loman NJ", "Misra RV", "Dallman TJ", "Constantinidou C", "Gharbia SE", "Wain J", "Pallen MJ"], "EPubDate": "", "PubDate": "2012 May", "NlmUniqueID": "9604648", "LastAuthor": "Pallen MJ", "ArticleIds": {"pii": "nbt.2198", "medline": [], "pubmed": ["22522955"], "eid": "22522955", "rid": "22522955", "doi": "10.1038/nbt.2198"}, "Item": [], "History": {"received": "2011/12/19 00:00", "medline": ["2012/09/06 06:00"], "pubmed": ["2012/04/24 06:00"], "aheadofprint": "2012/04/22 00:00", "accepted": "2012/03/30 00:00", "entrez": "2012/04/24 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2012 May;30(5):434-9", "PubTypeList": ["Journal Article"], "References": ["Nat Biotechnol. 2013 Apr;31(4):296. PMID: 23563422", "Nat Biotechnol. 2013 Jul;31(7):592-4. PMID: 23839141", "Nat Biotechnol. 2013 Apr;31(4):294-6. PMID: 23563421", "Nat Biotechnol. 2012 Jun;30(6):562"], "Id": "22522955"}, {"DOI": "10.1093/jac/dkr515", "Title": "The TCA cycle is not required for selection or survival of multidrug-resistant Salmonella.", "Source": "J Antimicrob Chemother", "PmcRefCount": 2, "Issue": "3", "ISSN": "0305-7453", "Volume": "67", "FullJournalName": "The Journal of antimicrobial chemotherapy", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1460-2091", "ELocationID": "doi: 10.1093/jac/dkr515", "Pages": "589-99", "PubStatus": "ppublish+epublish", "AuthorList": ["Ricci V", "Loman N", "Pallen M", "Ivens A", "Fookes M", "Langridge GC", "Wain J", "Piddock LJ"], "EPubDate": "2011 Dec 20", "PubDate": "2012 Mar", "NlmUniqueID": "7513617", "LastAuthor": "Piddock LJ", "ArticleIds": {"pii": "dkr515", "medline": [], "pubmed": ["22186876"], "eid": "22186876", "pmc": "PMC4125622", "rid": "22186876", "pmcid": "pmc-id: PMC4125622;", "doi": "10.1093/jac/dkr515"}, "Item": [], "History": {"medline": ["2012/06/07 06:00"], "entrez": "2011/12/22 06:00", "aheadofprint": "2011/12/20 00:00", "pubmed": ["2011/12/22 06:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2012 Mar;67(3):589-99", "PubTypeList": ["Journal Article"], "References": [], "Id": "22186876"}, {"DOI": "10.1371/journal.pone.0052951", "Title": "Identification of novel imidazo[1,2-a]pyridine inhibitors targeting M. tuberculosis QcrB.", "Source": "PLoS One", "PmcRefCount": 10, "Issue": "12", "ISSN": "", "Volume": "7", "FullJournalName": "PloS one", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1932-6203", "ELocationID": "doi: 10.1371/journal.pone.0052951", "Pages": "e52951", "PubStatus": "ppublish+epublish", "AuthorList": ["Abrahams KA", "Cox JA", "Spivey VL", "Loman NJ", "Pallen MJ", "Constantinidou C", "Fern\u00e1ndez R", "Alemparte C", "Remui\u00f1\u00e1n MJ", "Barros D", "Ballell L", "Besra GS"], "EPubDate": "2012 Dec 31", "PubDate": "2012", "NlmUniqueID": "101285081", "LastAuthor": "Besra GS", "ArticleIds": {"pii": "PONE-D-12-28783", "medline": [], "pubmed": ["23300833"], "eid": "23300833", "pmc": "PMC3534098", "rid": "23300833", "pmcid": "pmc-id: PMC3534098;", "doi": "10.1371/journal.pone.0052951"}, "Item": [], "History": {"received": "2012/09/19 00:00", "medline": ["2013/06/26 06:00"], "pubmed": ["2013/01/10 06:00"], "epublish": "2012/12/31 00:00", "accepted": "2012/11/22 00:00", "entrez": "2013/01/10 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2012;7(12):e52951", "PubTypeList": ["Journal Article"], "References": [], "Id": "23300833"}, {"DOI": "10.1371/journal.pone.0026742", "Title": "Genome analysis of a highly virulent serotype 1 strain of Streptococcus pneumoniae from West Africa.", "Source": "PLoS One", "PmcRefCount": 2, "Issue": "10", "ISSN": "", "Volume": "7", "FullJournalName": "PloS one", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1932-6203", "ELocationID": "doi: 10.1371/journal.pone.0026742", "Pages": "e26742", "PubStatus": "ppublish+epublish", "AuthorList": ["Williams TM", "Loman NJ", "Ebruke C", "Musher DM", "Adegbola RA", "Pallen MJ", "Weinstock GM", "Antonio M"], "EPubDate": "2012 Oct 17", "PubDate": "2012", "NlmUniqueID": "101285081", "LastAuthor": "Antonio M", "ArticleIds": {"pii": "PONE-D-11-17002", "medline": [], "pubmed": ["23082106"], "eid": "23082106", "pmc": "PMC3474768", "rid": "23082106", "pmcid": "pmc-id: PMC3474768;", "doi": "10.1371/journal.pone.0026742"}, "Item": [], "History": {"received": "2011/08/31 00:00", "medline": ["2013/04/10 06:00"], "pubmed": ["2012/10/20 06:00"], "epublish": "2012/10/17 00:00", "accepted": "2011/10/02 00:00", "entrez": "2012/10/20 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2012;7(10):e26742", "PubTypeList": ["Journal Article"], "References": [], "Id": "23082106"}, {"DOI": "10.1128/JB.05374-11", "Title": "Complete genome sequence of the Crohn's disease-associated adherent-invasive Escherichia coli strain HM605.", "Source": "J Bacteriol", "PmcRefCount": 7, "Issue": "17", "ISSN": "0021-9193", "Volume": "193", "FullJournalName": "Journal of bacteriology", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1098-5530", "ELocationID": "doi: 10.1128/JB.05374-11", "Pages": "4540", "PubStatus": "ppublish+epublish", "AuthorList": ["Clarke DJ", "Chaudhuri RR", "Martin HM", "Campbell BJ", "Rhodes JM", "Constantinidou C", "Pallen MJ", "Loman NJ", "Cunningham AF", "Browning DF", "Henderson IR"], "EPubDate": "2011 Jun 24", "PubDate": "2011 Sep", "NlmUniqueID": "2985120R", "LastAuthor": "Henderson IR", "ArticleIds": {"pii": "JB.05374-11", "medline": [], "pubmed": ["21705601"], "eid": "21705601", "pmc": "PMC3165516", "rid": "21705601", "pmcid": "pmc-id: PMC3165516;", "doi": "10.1128/JB.05374-11"}, "Item": [], "History": {"medline": ["2011/10/07 06:00"], "entrez": "2011/06/28 06:00", "aheadofprint": "2011/06/24 00:00", "pubmed": ["2011/06/28 06:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2011 Sep;193(17):4540", "PubTypeList": ["Journal Article"], "References": [], "Id": "21705601"}, {"DOI": "10.1056/NEJMoa1107643", "Title": "Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4.", "Source": "N Engl J Med", "PmcRefCount": 108, "Issue": "8", "ISSN": "0028-4793", "Volume": "365", "FullJournalName": "The New England journal of medicine", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1533-4406", "ELocationID": "doi: 10.1056/NEJMoa1107643", "Pages": "718-24", "PubStatus": "ppublish+epublish", "AuthorList": ["Rohde H", "Qin J", "Cui Y", "Li D", "Loman NJ", "Hentschke M", "Chen W", "Pu F", "Peng Y", "Li J", "Xi F", "Li S", "Li Y", "Zhang Z", "Yang X", "Zhao M", "Wang P", "Guan Y", "Cen Z", "Zhao X", "Christner M", "Kobbe R", "Loos S", "Oh J", "Yang L", "Danchin A", "Gao GF", "Song Y", "Li Y", "Yang H", "Wang J", "Xu J", "Pallen MJ", "Wang J", "Aepfelbacher M", "Yang R", "E. coli O104:H4 Genome Analysis Crowd-Sourcing Consortium"], "EPubDate": "2011 Jul 27", "PubDate": "2011 Aug 25", "NlmUniqueID": "0255562", "LastAuthor": "Yang R", "ArticleIds": {"rid": "21793736", "medline": [], "pubmed": ["21793736"], "eid": "21793736", "doi": "10.1056/NEJMoa1107643"}, "Item": [], "History": {"medline": ["2011/08/31 06:00"], "entrez": "2011/07/29 06:00", "aheadofprint": "2011/07/27 00:00", "pubmed": ["2011/07/29 06:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2011 Aug 25;365(8):718-24", "PubTypeList": ["Journal Article"], "References": [], "Id": "21793736"}, {"DOI": "10.1186/gm269", "Title": "Are diagnostic and public health bacteriology ready to become branches of genomic medicine?", "Source": "Genome Med", "PmcRefCount": 6, "Issue": "8", "ISSN": "", "Volume": "3", "FullJournalName": "Genome medicine", "RecordStatus": "PubMed", "ESSN": "1756-994X", "ELocationID": "doi: 10.1186/gm269", "Pages": "53", "PubStatus": "epublish", "AuthorList": ["Pallen MJ", "Loman NJ"], "EPubDate": "2011 Aug 23", "PubDate": "2011 Aug 23", "NlmUniqueID": "101475844", "LastAuthor": "Loman NJ", "ArticleIds": {"pii": "gm269", "medline": [], "pubmed": ["21861847"], "eid": "21861847", "pmc": "PMC3238179", "rid": "21861847", "pmcid": "pmc-id: PMC3238179;", "doi": "10.1186/gm269"}, "Item": [], "History": {"medline": ["2011/08/25 06:01"], "entrez": "2011/08/25 06:00", "aheadofprint": "2011/08/23 00:00", "pubmed": ["2011/08/25 06:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2011 Aug 23;3(8):53", "PubTypeList": ["Journal Article"], "References": [], "Id": "21861847"}, {"DOI": "10.1093/jac/dkr168", "Title": "Whole-genome comparison of two Acinetobacter baumannii isolates from a single patient, where resistance developed during tigecycline therapy.", "Source": "J Antimicrob Chemother", "PmcRefCount": 18, "Issue": "7", "ISSN": "0305-7453", "Volume": "66", "FullJournalName": "The Journal of antimicrobial chemotherapy", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1460-2091", "ELocationID": "doi: 10.1093/jac/dkr168", "Pages": "1499-503", "PubStatus": "ppublish+epublish", "AuthorList": ["Hornsey M", "Loman N", "Wareham DW", "Ellington MJ", "Pallen MJ", "Turton JF", "Underwood A", "Gaulton T", "Thomas CP", "Doumith M", "Livermore DM", "Woodford N"], "EPubDate": "2011 May 12", "PubDate": "2011 Jul", "NlmUniqueID": "7513617", "LastAuthor": "Woodford N", "ArticleIds": {"pii": "dkr168", "medline": [], "pubmed": ["21565804"], "eid": "21565804", "rid": "21565804", "doi": "10.1093/jac/dkr168"}, "Item": [], "History": {"medline": ["2011/09/29 06:00"], "entrez": "2011/05/14 06:00", "aheadofprint": "2011/05/12 00:00", "pubmed": ["2011/05/14 06:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2011 Jul;66(7):1499-503", "PubTypeList": ["Journal Article"], "References": [], "Id": "21565804"}, {"DOI": "10.1128/JB.00245-11", "Title": "Genome sequences of three Acinetobacter baumannii strains assigned to the multilocus sequence typing genotypes ST2, ST25, and ST78.", "Source": "J Bacteriol", "PmcRefCount": 3, "Issue": "9", "ISSN": "0021-9193", "Volume": "193", "FullJournalName": "Journal of bacteriology", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1098-5530", "ELocationID": "doi: 10.1128/JB.00245-11", "Pages": "2359-60", "PubStatus": "ppublish+epublish", "AuthorList": ["Zarrilli R", "Giannouli M", "Rocco F", "Loman NJ", "Haines AS", "Constantinidou C", "Pallen MJ", "Triassi M", "Di Nocera PP"], "EPubDate": "2011 Mar 11", "PubDate": "2011 May", "NlmUniqueID": "2985120R", "LastAuthor": "Di Nocera PP", "ArticleIds": {"pii": "JB.00245-11", "medline": [], "pubmed": ["21398548"], "eid": "21398548", "pmc": "PMC3133085", "rid": "21398548", "pmcid": "pmc-id: PMC3133085;", "doi": "10.1128/JB.00245-11"}, "Item": [], "History": {"medline": ["2011/07/13 06:00"], "entrez": "2011/03/15 06:00", "aheadofprint": "2011/03/11 00:00", "pubmed": ["2011/03/15 06:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2011 May;193(9):2359-60", "PubTypeList": ["Journal Article"], "References": [], "Id": "21398548"}, {"DOI": "10.1371/journal.pone.0028388", "Title": "Calculating orthologs in bacteria and Archaea: a divide and conquer approach.", "Source": "PLoS One", "PmcRefCount": 3, "Issue": "12", "ISSN": "", "Volume": "6", "FullJournalName": "PloS one", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1932-6203", "ELocationID": "doi: 10.1371/journal.pone.0028388", "Pages": "e28388", "PubStatus": "ppublish+epublish", "AuthorList": ["Halachev MR", "Loman NJ", "Pallen MJ"], "EPubDate": "2011 Dec 12", "PubDate": "2011", "NlmUniqueID": "101285081", "LastAuthor": "Pallen MJ", "ArticleIds": {"pii": "PONE-D-11-17551", "medline": [], "pubmed": ["22174796"], "eid": "22174796", "pmc": "PMC3236195", "rid": "22174796", "pmcid": "pmc-id: PMC3236195;", "doi": "10.1371/journal.pone.0028388"}, "Item": [], "History": {"received": "2011/09/07 00:00", "medline": ["2012/04/24 06:00"], "pubmed": ["2011/12/17 06:00"], "epublish": "2011/12/12 00:00", "accepted": "2011/11/07 00:00", "entrez": "2011/12/17 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2011;6(12):e28388", "PubTypeList": ["Journal Article"], "References": [], "Id": "22174796"}, {"DOI": "10.1016/j.mib.2010.08.003", "Title": "High-throughput sequencing and clinical microbiology: progress, opportunities and challenges.", "Source": "Curr Opin Microbiol", "PmcRefCount": 35, "Issue": "5", "ISSN": "1369-5274", "Volume": "13", "FullJournalName": "Current opinion in microbiology", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1879-0364", "ELocationID": "doi: 10.1016/j.mib.2010.08.003", "Pages": "625-31", "PubStatus": "ppublish+epublish", "AuthorList": ["Pallen MJ", "Loman NJ", "Penn CW"], "EPubDate": "2010 Sep 16", "PubDate": "2010 Oct", "NlmUniqueID": "9815056", "LastAuthor": "Penn CW", "ArticleIds": {"pii": "S1369-5274(10)00117-7", "medline": [], "pubmed": ["20843733"], "eid": "20843733", "rid": "20843733", "doi": "10.1016/j.mib.2010.08.003"}, "Item": [], "History": {"received": "2010/06/17 00:00", "medline": ["2010/12/31 06:00"], "revised": "2010/08/04 00:00", "pubmed": ["2010/09/17 06:00"], "aheadofprint": "2010/09/16 00:00", "accepted": "2010/08/18 00:00", "entrez": "2010/09/17 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2010 Oct;13(5):625-31", "PubTypeList": ["Journal Article", "Review"], "References": [], "Id": "20843733"}, {"DOI": "10.1186/1751-0473-5-6", "Title": "EntrezAJAX: direct web browser access to the Entrez Programming Utilities.", "Source": "Source Code Biol Med", "PmcRefCount": 0, "Issue": "", "ISSN": "", "Volume": "5", "FullJournalName": "Source code for biology and medicine", "RecordStatus": "PubMed", "ESSN": "1751-0473", "ELocationID": "doi: 10.1186/1751-0473-5-6", "Pages": "6", "PubStatus": "epublish", "AuthorList": ["Loman NJ", "Pallen MJ"], "EPubDate": "2010 Jun 21", "PubDate": "2010 Jun 21", "NlmUniqueID": "101276533", "LastAuthor": "Pallen MJ", "ArticleIds": {"pii": "1751-0473-5-6", "medline": [], "pubmed": ["20565938"], "eid": "20565938", "pmc": "PMC2904758", "rid": "20565938", "pmcid": "pmc-id: PMC2904758;", "doi": "10.1186/1751-0473-5-6"}, "Item": [], "History": {"received": "2010/04/15 00:00", "medline": ["2010/06/23 06:01"], "pubmed": ["2010/06/23 06:00"], "aheadofprint": "2010/06/21 00:00", "accepted": "2010/06/21 00:00", "entrez": "2010/06/23 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2010 Jun 21;5:6", "PubTypeList": ["Journal Article"], "References": [], "Id": "20565938"}, {"DOI": "10.1016/j.jhin.2010.01.012", "Title": "High-throughput whole-genome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak.", "Source": "J Hosp Infect", "PmcRefCount": 32, "Issue": "1", "ISSN": "0195-6701", "Volume": "75", "FullJournalName": "The Journal of hospital infection", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1532-2939", "ELocationID": "doi: 10.1016/j.jhin.2010.01.012", "Pages": "37-41", "PubStatus": "ppublish+epublish", "AuthorList": ["Lewis T", "Loman NJ", "Bingle L", "Jumaa P", "Weinstock GM", "Mortiboy D", "Pallen MJ"], "EPubDate": "2010 Mar 17", "PubDate": "2010 May", "NlmUniqueID": "8007166", "LastAuthor": "Pallen MJ", "ArticleIds": {"pii": "S0195-6701(10)00028-9", "medline": [], "pubmed": ["20299126"], "eid": "20299126", "rid": "20299126", "doi": "10.1016/j.jhin.2010.01.012"}, "Item": [], "History": {"received": "2009/11/13 00:00", "medline": ["2010/06/30 06:00"], "pubmed": ["2010/03/20 06:00"], "aheadofprint": "2010/03/17 00:00", "accepted": "2010/01/21 00:00", "entrez": "2010/03/20 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2010 May;75(1):37-41", "PubTypeList": ["Journal Article"], "References": [], "Id": "20299126"}, {"DOI": "10.1186/1471-2164-11-67", "Title": "Simple sequence repeats in Helicobacter canadensis and their role in phase variable expression and C-terminal sequence switching.", "Source": "BMC Genomics", "PmcRefCount": 5, "Issue": "", "ISSN": "", "Volume": "11", "FullJournalName": "BMC genomics", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1471-2164", "ELocationID": "doi: 10.1186/1471-2164-11-67", "Pages": "67", "PubStatus": "epublish", "AuthorList": ["Snyder LA", "Loman NJ", "Linton JD", "Langdon RR", "Weinstock GM", "Wren BW", "Pallen MJ"], "EPubDate": "2010 Jan 27", "PubDate": "2010 Jan 27", "NlmUniqueID": "100965258", "LastAuthor": "Pallen MJ", "ArticleIds": {"pii": "1471-2164-11-67", "medline": [], "pubmed": ["20105305"], "eid": "20105305", "pmc": "PMC2823697", "rid": "20105305", "pmcid": "pmc-id: PMC2823697;", "doi": "10.1186/1471-2164-11-67"}, "Item": [], "History": {"received": "2009/10/27 00:00", "medline": ["2010/05/04 06:00"], "pubmed": ["2010/01/29 06:00"], "aheadofprint": "2010/01/27 00:00", "accepted": "2010/01/27 00:00", "entrez": "2010/01/29 06:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2010 Jan 27;11:67", "PubTypeList": ["Journal Article"], "References": [], "Id": "20105305"}, {"DOI": "10.1128/JB.00729-09", "Title": "Genome sequence of the emerging pathogen Helicobacter canadensis.", "Source": "J Bacteriol", "PmcRefCount": 6, "Issue": "17", "ISSN": "0021-9193", "Volume": "191", "FullJournalName": "Journal of bacteriology", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1098-5530", "ELocationID": "doi: 10.1128/JB.00729-09", "Pages": "5566-7", "PubStatus": "ppublish+epublish", "AuthorList": ["Loman NJ", "Snyder LA", "Linton JD", "Langdon R", "Lawson AJ", "Weinstock GM", "Wren BW", "Pallen MJ"], "EPubDate": "2009 Jun 19", "PubDate": "2009 Sep", "NlmUniqueID": "2985120R", "LastAuthor": "Pallen MJ", "ArticleIds": {"pii": "JB.00729-09", "medline": [], "pubmed": ["19542273"], "eid": "19542273", "pmc": "PMC2725615", "rid": "19542273", "pmcid": "pmc-id: PMC2725615;", "doi": "10.1128/JB.00729-09"}, "Item": [], "History": {"medline": ["2009/08/29 09:00"], "entrez": "2009/06/23 09:00", "aheadofprint": "2009/06/19 00:00", "pubmed": ["2009/06/23 09:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2009 Sep;191(17):5566-7", "PubTypeList": ["Journal Article"], "References": [], "Id": "19542273"}, {"DOI": "10.1016/j.tim.2009.06.005", "Title": "Microbial TIR domains: not necessarily agents of subversion?", "Source": "Trends Microbiol", "PmcRefCount": 9, "Issue": "9", "ISSN": "0966-842X", "Volume": "17", "FullJournalName": "Trends in microbiology", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1878-4380", "ELocationID": "doi: 10.1016/j.tim.2009.06.005", "Pages": "393-8", "PubStatus": "ppublish+epublish", "AuthorList": ["Spear AM", "Loman NJ", "Atkins HS", "Pallen MJ"], "EPubDate": "2009 Aug 28", "PubDate": "2009 Sep", "NlmUniqueID": "9310916", "LastAuthor": "Pallen MJ", "ArticleIds": {"pii": "S0966-842X(09)00153-X", "medline": [], "pubmed": ["19716705"], "eid": "19716705", "rid": "19716705", "doi": "10.1016/j.tim.2009.06.005"}, "Item": [], "History": {"received": "2009/02/01 00:00", "medline": ["2009/11/05 06:00"], "revised": "2009/05/15 00:00", "pubmed": ["2009/09/01 06:00"], "aheadofprint": "2009/08/28 00:00", "accepted": "2009/06/10 00:00", "entrez": "2009/09/01 09:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2009 Sep;17(9):393-8", "PubTypeList": ["Journal Article"], "References": [], "Id": "19716705"}, {"DOI": "10.1371/journal.pgen.1000416", "Title": "The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats.", "Source": "PLoS Genet", "PmcRefCount": 20, "Issue": "3", "ISSN": "1553-7390", "Volume": "5", "FullJournalName": "PLoS genetics", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1553-7404", "ELocationID": "doi: 10.1371/journal.pgen.1000416", "Pages": "e1000416", "PubStatus": "ppublish+epublish", "AuthorList": ["Woo PC", "Lau SK", "Tse H", "Teng JL", "Curreem SO", "Tsang AK", "Fan RY", "Wong GK", "Huang Y", "Loman NJ", "Snyder LA", "Cai JJ", "Huang JD", "Mak W", "Pallen MJ", "Lok S", "Yuen KY"], "EPubDate": "2009 Mar 13", "PubDate": "2009 Mar", "NlmUniqueID": "101239074", "LastAuthor": "Yuen KY", "ArticleIds": {"medline": [], "pubmed": ["19283063"], "eid": "19283063", "pmc": "PMC2652115", "rid": "19283063", "pmcid": "pmc-id: PMC2652115;", "doi": "10.1371/journal.pgen.1000416"}, "Item": [], "History": {"received": "2008/11/07 00:00", "medline": ["2009/06/16 09:00"], "pubmed": ["2009/03/14 09:00"], "epublish": "2009/03/13 00:00", "accepted": "2009/02/10 00:00", "entrez": "2009/03/14 09:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2009 Mar;5(3):e1000416", "PubTypeList": ["Journal Article"], "References": [], "Id": "19283063"}, {"DOI": "10.1007/s00248-008-9465-9", "Title": "Next-generation sequencing--the promise and perils of charting the great microbial unknown.", "Source": "Microb Ecol", "PmcRefCount": 4, "Issue": "1", "ISSN": "0095-3628", "Volume": "57", "FullJournalName": "Microbial ecology", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1432-184X", "ELocationID": "doi: 10.1007/s00248-008-9465-9", "Pages": "1-3", "PubStatus": "ppublish+epublish", "AuthorList": ["Snyder LA", "Loman N", "Pallen MJ", "Penn CW"], "EPubDate": "2008 Nov 18", "PubDate": "2009 Jan", "NlmUniqueID": "7500663", "LastAuthor": "Penn CW", "ArticleIds": {"rid": "19015912", "medline": [], "pubmed": ["19015912"], "eid": "19015912", "doi": "10.1007/s00248-008-9465-9"}, "Item": [], "History": {"received": "2008/09/29 00:00", "medline": ["2009/03/11 09:00"], "pubmed": ["2008/11/19 09:00"], "aheadofprint": "2008/11/18 00:00", "accepted": "2008/10/16 00:00", "entrez": "2008/11/19 09:00"}, "LangList": ["English"], "HasAbstract": 0, "SO": "2009 Jan;57(1):1-3", "PubTypeList": ["Journal Article", "Review"], "References": [], "Id": "19015912"}, {"DOI": "10.1016/j.tim.2008.10.002", "Title": "Bacterial flagellar diversity and evolution: seek simplicity and distrust it?", "Source": "Trends Microbiol", "PmcRefCount": 10, "Issue": "1", "ISSN": "0966-842X", "Volume": "17", "FullJournalName": "Trends in microbiology", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1878-4380", "ELocationID": "doi: 10.1016/j.tim.2008.10.002", "Pages": "1-5", "PubStatus": "ppublish+epublish", "AuthorList": ["Snyder LA", "Loman NJ", "F\u00fctterer K", "Pallen MJ"], "EPubDate": "2008 Dec 10", "PubDate": "2009 Jan", "NlmUniqueID": "9310916", "LastAuthor": "Pallen MJ", "ArticleIds": {"pii": "S0966-842X(08)00265-5", "medline": [], "pubmed": ["19081724"], "eid": "19081724", "rid": "19081724", "doi": "10.1016/j.tim.2008.10.002"}, "Item": [], "History": {"received": "2008/07/15 00:00", "medline": ["2009/04/18 09:00"], "revised": "2008/10/16 00:00", "pubmed": ["2008/12/17 09:00"], "aheadofprint": "2008/12/10 00:00", "accepted": "2008/10/16 00:00", "entrez": "2008/12/17 09:00"}, "LangList": ["English"], "HasAbstract": 1, "SO": "2009 Jan;17(1):1-5", "PubTypeList": ["Journal Article"], "References": [], "Id": "19081724"}, {"DOI": "10.2217/17460913.3.2.111", "Title": "XDR-TB genome sequencing: a glimpse of the microbiology of the future.", "Source": "Future Microbiol", "PmcRefCount": 3, "Issue": "2", "ISSN": "1746-0913", "Volume": "3", "FullJournalName": "Future microbiology", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1746-0921", "ELocationID": "doi: 10.2217/17460913.3.2.111", "Pages": "111-3", "PubStatus": "ppublish", "AuthorList": ["Loman NJ", "Pallen MJ"], "EPubDate": "", "PubDate": "2008 Apr", "NlmUniqueID": "101278120", "LastAuthor": "Pallen MJ", "ArticleIds": {"rid": "18366328", "medline": [], "pubmed": ["18366328"], "eid": "18366328", "doi": "10.2217/17460913.3.2.111"}, "Item": [], "History": {"medline": ["2008/08/05 09:00"], "entrez": "2008/03/28 09:00", "pubmed": ["2008/03/28 09:00"]}, "LangList": ["English"], "HasAbstract": 0, "SO": "2008 Apr;3(2):111-3", "PubTypeList": ["Editorial"], "References": [], "Id": "18366328"}, {"DOI": "10.1093/nar/gkm928", "Title": "xBASE2: a comprehensive resource for comparative bacterial genomics.", "Source": "Nucleic Acids Res", "PmcRefCount": 55, "Issue": "Database issue", "ISSN": "0305-1048", "Volume": "36", "FullJournalName": "Nucleic acids research", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1362-4962", "ELocationID": "", "Pages": "D543-6", "PubStatus": "ppublish+epublish", "AuthorList": ["Chaudhuri RR", "Loman NJ", "Snyder LA", "Bailey CM", "Stekel DJ", "Pallen MJ"], "EPubDate": "2007 Nov 5", "PubDate": "2008 Jan", "NlmUniqueID": "0411011", "LastAuthor": "Pallen MJ", "ArticleIds": {"pii": "gkm928", "medline": [], "pubmed": ["17984072"], "eid": "17984072", "pmc": "PMC2238843", "rid": "17984072", "pmcid": "pmc-id: PMC2238843;", "doi": "10.1093/nar/gkm928"}, "Item": [], "History": {"medline": ["2008/03/18 09:00"], "entrez": "2007/11/07 09:00", "aheadofprint": "2007/11/05 00:00", "pubmed": ["2007/11/07 09:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2008 Jan;36(Database issue):D543-6", "PubTypeList": ["Journal Article"], "References": [], "Id": "17984072"}, {"Title": "Tricorn-like proteases in bacteria.", "Source": "Trends Microbiol", "PmcRefCount": 2, "Issue": "11", "ISSN": "0966-842X", "Volume": "9", "FullJournalName": "Trends in microbiology", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1878-4380", "ELocationID": "", "Pages": "518-21", "PubStatus": "ppublish", "AuthorList": ["Pallen MJ", "Lam AC", "Loman N"], "EPubDate": "", "PubDate": "2001 Nov", "NlmUniqueID": "9310916", "LastAuthor": "Loman N", "ArticleIds": {"pii": "S0966-842X(01)02199-0", "rid": "11825690", "medline": [], "pubmed": ["11825690"], "eid": "11825690"}, "HasAbstract": 1, "History": {"medline": ["2002/05/15 10:01"], "entrez": "2002/02/05 10:00", "pubmed": ["2002/02/05 10:00"]}, "LangList": ["English"], "Item": [], "SO": "2001 Nov;9(11):518-21", "PubTypeList": ["Journal Article"], "References": [], "Id": "11825690"}, {"Title": "An abundance of bacterial ADP-ribosyltransferases--implications for the origin of exotoxins and their human homologues.", "Source": "Trends Microbiol", "PmcRefCount": 12, "Issue": "7", "ISSN": "0966-842X", "Volume": "9", "FullJournalName": "Trends in microbiology", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1878-4380", "ELocationID": "", "Pages": "302-7; discussion 308", "PubStatus": "ppublish", "AuthorList": ["Pallen MJ", "Lam AC", "Loman NJ", "McBride A"], "EPubDate": "", "PubDate": "2001 Jul", "NlmUniqueID": "9310916", "LastAuthor": "McBride A", "ArticleIds": {"pii": "S0966-842X(01)02074-1", "rid": "11435081", "medline": [], "pubmed": ["11435081"], "eid": "11435081"}, "HasAbstract": 1, "History": {"medline": ["2001/09/28 10:01"], "entrez": "2001/07/04 10:00", "pubmed": ["2001/07/04 10:00"]}, "LangList": ["English"], "Item": [], "SO": "2001 Jul;9(7):302-7; discussion 308", "PubTypeList": ["Journal Article"], "References": [], "Id": "11435081"}, {"DOI": "10.1089/10906590050145249", "Title": "Sequencing of the Francisella tularensis strain Schu 4 genome reveals the shikimate and purine metabolic pathways, targets for the construction of a rationally attenuated auxotrophic vaccine.", "Source": "Microb Comp Genomics", "PmcRefCount": 15, "Issue": "1", "ISSN": "1090-6592", "Volume": "5", "FullJournalName": "Microbial & comparative genomics", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "", "ELocationID": "", "Pages": "25-39", "PubStatus": "ppublish", "AuthorList": ["Karlsson J", "Prior RG", "Williams K", "Lindler L", "Brown KA", "Chatwell N", "Hjalmarsson K", "Loman N", "Mack KA", "Pallen M", "Popek M", "Sandstr\u00f6m G", "Sj\u00f6stedt A", "Svensson T", "Tamas I", "Andersson SG", "Wren BW", "Oyston PC", "Titball RW"], "EPubDate": "", "PubDate": "2000", "NlmUniqueID": "9616596", "LastAuthor": "Titball RW", "ArticleIds": {"rid": "11011763", "medline": [], "pubmed": ["11011763"], "eid": "11011763", "doi": "10.1089/10906590050145249"}, "Item": [], "History": {"medline": ["2001/02/28 10:01"], "entrez": "2000/09/30 11:00", "pubmed": ["2000/09/30 11:00"]}, "LangList": ["English"], "HasAbstract": 1, "SO": "2000;5(1):25-39", "PubTypeList": ["Journal Article"], "References": [], "Id": "11011763"}, {"Title": "Videos, photographs, and patient consent. Medical educationalists can free themselves from constraints of \"real world\" images.", "Source": "BMJ", "PmcRefCount": 0, "Issue": "7171", "ISSN": "0959-8138", "Volume": "317", "FullJournalName": "BMJ (Clinical research ed.)", "RecordStatus": "PubMed - indexed for MEDLINE", "ESSN": "1756-1833", "ELocationID": "", "Pages": "1522", "PubStatus": "ppublish", "AuthorList": ["Pallen M", "Loman N"], "EPubDate": "", "PubDate": "1998 Nov 28", "NlmUniqueID": "8900488", "LastAuthor": "Loman N", "ArticleIds": {"medline": [], "pubmed": ["9831592"], "eid": "9831592", "pmc": "PMC1114350", "rid": "9831592", "pmcid": "pmc-id: PMC1114350;"}, "HasAbstract": 0, "History": {"medline": ["1998/11/30 00:01"], "entrez": "1998/11/30 00:00", "pubmed": ["1998/11/30 00:00"]}, "LangList": ["English"], "Item": [], "SO": "1998 Nov 28;317(7171):1522", "PubTypeList": ["Comment", "Letter"], "References": ["BMJ. 1998 Mar 28;316(7136):1009-11. PMID: 9550967"], "Id": "9831592"}], "entrezajax": {"error": false}}