Hello, Thank you for this powerful tool.
I got a problem when using singularity version of fastqwiper (v 2024.2.104).
The commonds were as follows:
$ ls -lh /lustre/home/acct-clswcc/clswcc-xhz/data/riceTGS/tmp
total 27G
-rw-r--r-- 1 xhz xhz 27G Jun 28 20:35 SE-134.fastq.gz
$ singularity run --bind /lustre/home/xhz/data/riceTGS/tmp:/fastqwiper/data --writable-tmpfs ~/sif/mazzalab_fastqwiper_fastqwiper.sif.sif single 8 SE-134 33 ACGTN 500000
Processing single-end file in parallel
Error: Snakefile "pipeline/fix_wipe_single_reads_parallel.smk" not found.
It seemed that lack of pipeline/fix_wipe_single_reads_parallel.smk. But i haven't got 'pipeline' folder in github. How can i got these files?
Hello, Thank you for this powerful tool.
I got a problem when using singularity version of fastqwiper (v 2024.2.104).
The commonds were as follows:
It seemed that lack of pipeline/fix_wipe_single_reads_parallel.smk. But i haven't got 'pipeline' folder in github. How can i got these files?