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[benpietras]

Here is a working version:

FROM python:3.8-slim-bullseye

# Install system dependencies (for building)
RUN apt-get update &&
apt-get install -y --no-install-recommends
build-essential
libcurl4-openssl-dev
libssl-dev
libbz2-dev
libreadline-dev
libsqlite3-dev
wget
curl
llvm
make
g++
git
unzip
&& rm -rf /var/lib/apt/lists/*

# Install Python dependencies
RUN pip install numpy scipy

# Copy your source code into the container
COPY . /app
WORKDIR /app

# Install the package (RRA-related compilation will now work)
RUN python setup.py install

# Entry point
ENTRYPOINT echo "Welcome to MAGeCK" && mageck --version && /bin/bash