tricycle can also be used for bulk rnaseq data analysis?

[liangdp1984]

Nice tools! tricycle can also be used for bulk rnaseq data analysis?

[kasperdanielhansen]

Yes and no. Most samples are a mixture of cycling and non-cycling cells, so estimating a cell cycle position does not make a lot of sense. If your cells are sorted or synchronized, I don't see why it wouldn't work (and I think we did do some experiments on samples like this, and it worked).

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On Sun, Nov 13, 2022 at 10:27 PM dapeng Liang ***@***.***> wrote: Nice tools! tricycle can also be used for bulk rnaseq data analysis? — Reply to this email directly, view it on GitHub <#10>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABF2DH5OOA6CGZSBSRLCSL3WIGWSBANCNFSM6AAAAAAR7L2YE4> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

-- Best, Kasper