As of updating to Vitessce 3.5.1+Galaxy3, it now needs TiffData tags in the OME XML to render OME-TIFF images, for example:
<TiffData IFD="0" FirstZ="0" FirstT="0" FirstC="0" PlaneCount="1">
</TiffData>
<TiffData IFD="1" FirstZ="0" FirstT="0" FirstC="1" PlaneCount="1">
</TiffData>
<TiffData IFD="2" FirstZ="0" FirstT="0" FirstC="2" PlaneCount="1">
</TiffData>
Seems that ashlar and backsub may not include these in the XML, also need to check bfconvert. Alternatively add something to the Vitessce wrapper that can handle missing TiffData
As of updating to
Vitessce 3.5.1+Galaxy3, it now needs TiffData tags in the OME XML to render OME-TIFF images, for example:Seems that ashlar and backsub may not include these in the XML, also need to check bfconvert. Alternatively add something to the Vitessce wrapper that can handle missing TiffData