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Can I Performing scGSEA by using Seurat object? #4

@m9994

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@m9994

In tutorial, program looks like start from RAW counts matrix.
Can I use normalized Seurat object which have already done PCA UMAP?

data("small_BC_atlas")

data <- gficf( M = small_BC_atlas)

data <- runPCA(data = data,dim = 10,use.odgenes = T)

data <-runReduction(data = data,reduction = "umap",nt = 2,verbose = T,n_neighbors=150)

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