submit

#PBS -u cgrimault
#! /bin/bash
if [ "${1}"  == "--help" ]; then
     	    echo "  "
     	    echo "  "
     	    echo "---------------------------------------------------------------------------------------------------  "
	    echo "Options for running this configuration file:"
	    echo "--help                    Prints this message"
	    echo "Job name                  Parse executable name to be submitted as a parameter"
	    echo "<run time>                --short; --medium; --long; Default: --short"
     	    echo "  "
else
que="cms_local_short"
for var in $@ ; do
    	if [  "${var}" == "--short"  ]; then
            que="cms_local_short"	 
	fi		 
        if [  "${var}" == "--medium" ]; then
            	que="sbg_local_mdm"	 
        fi	
        if [  "${var}" == "--long"   ]; then
            	que="cms_local"	 
        fi		 
       done
export HOME=$(pwd)
jName=${1}
var=${1}
output="out_${1}.o"
error="err_${1}.e"
echo "Print out system variables:    "
echo "Working dir: $HOME"
echo "Job name:  ${jName} "
echo "que type:  ${que} "
echo "output:    ${output}    "
echo "error:     ${error}    "
qsub -q ${que}  -o ${output} -e ${error} -N ${jName} -v outfile=${jName}   qsub_submit.sh 
fi
#-v FOO="hello",BAR="world"