Rdiscvr/NAMESPACE at master · bimberlabinternal/Rdiscvr · GitHub

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# Generated by roxygen2: do not edit by hand

S3method(ggplot_add,dimplot_arrows)
export(AppendClonotypeEnrichmentPVals)
export(AppendVireoData)
export(ApplyAcuteNxMetadata)
export(ApplyCloneFilters)
export(ApplyEC_Metadata)
export(ApplyIMPAC_TB_Human_Metadata)
export(ApplyKnownClonotypicData)
export(ApplyMalariaMetadata)
export(ApplyPC475Metadata)
export(ApplyPC531Metadata)
export(ApplyPPG_Stim_Metadata)
export(ApplyTBMetadata)
export(CalculateAndStoreTcrRepertoireStats)
export(CalculateClonotypeEnrichment)
export(CalculateIsotype)
export(ClassifyTNKByExpression)
export(CompareCellBarcodeSets)
export(ConvertAxesToArrows)
export(CreateMergedTcrClonotypeFile)
export(Download10xRawDataForLoupeFile)
export(DownloadAndAppendCellHashing)
export(DownloadAndAppendNimble)
export(DownloadAndAppendTcrClonotypes)
export(DownloadCiteSeqDataForLoupeFile)
export(DownloadMetadataForSeuratObject)
export(DownloadOutputDirectoryFromOutputFile)
export(DownloadOutputFile)
export(DownloadRawHashingDataForLoupeFile)
export(FormatFeaturePlotColorScale)
export(GenerateSRATable)
export(GenerateTcrPlot)
export(GroupByMhcSimilarity)
export(GroupOverlappingClones)
export(IdentifyAndStoreActiveClonotypes)
export(LoadQuantifyRoleMap)
export(MakeClonotypePlot)
export(PerformDefaultNimbleAppend)
export(PerformMhcDimRedux)
export(PerformMhcNormalization)
export(PrepareTcrData)
export(Quantify10xData)
export(QueryAndApplyCdnaMetadata)
export(QueryAndApplyMetadataUsingCDNA)
export(RenameUmapAxes)
export(RunCoNGA)
export(SetLabKeyDefaults)
export(SummarizeTNK_Activation)
export(UploadOutputFile)
export(UploadSeuratObject)
export(theme_bimberlab)
import(Rlabkey)
import(Seurat)
import(dplyr)
import(ggplot2)
import(utils)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,GetAssayData)
importFrom(dplyr,"%>%")
importFrom(dplyr,across)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,coalesce)
importFrom(dplyr,count)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,group_by_at)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,summarise)
importFrom(dplyr,summarise_at)
importFrom(dplyr,summarize)
importFrom(magrittr,"%>%")
importFrom(naturalsort,naturalsort)
importFrom(stats,quantile)
importFrom(tibble,as_tibble)
importFrom(tibble,tibble)