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run workflow (v1) with conda envs #270

run workflow (v1) with conda envs

run workflow (v1) with conda envs #270

Triggered via schedule August 9, 2025 03:27
Status Failure
Total duration 9m 13s
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ci_workflow.yaml

on: schedule
Matrix: run-integration-tests-with-conda-install
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4 errors and 11 warnings
ubuntu-latest - Workflow with snakemake conda envs
Process completed with exit code 1.
ubuntu-latest - Workflow with snakemake conda envs
Process completed with exit code 1.
macos-13 - Workflow with snakemake conda envs
Process completed with exit code 1.
macos-13 - Workflow with snakemake conda envs
Process completed with exit code 1.
ubuntu-latest - Workflow with snakemake conda envs
/usr/share/miniconda/lib/python3.13/argparse.py:1258: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. subnamespace, arg_strings = subparser.parse_known_args(arg_strings, None)
ubuntu-latest - Workflow with snakemake conda envs
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
ubuntu-latest - Workflow with snakemake conda envs
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
ubuntu-latest - Workflow with snakemake conda envs
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
macos-13 - Workflow with snakemake conda envs
/Users/runner/miniconda3/lib/python3.13/argparse.py:1258: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. subnamespace, arg_strings = subparser.parse_known_args(arg_strings, None)
macos-13 - Workflow with snakemake conda envs
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
macos-13 - Workflow with snakemake conda envs
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
macos-13 - Workflow with snakemake conda envs
/Users/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
macos-13 - Workflow with snakemake conda envs
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
macos-13 - Workflow with snakemake conda envs
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.
macos-13 - Workflow with snakemake conda envs
entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.