Hi, @breons !
I am now trying Clinker on my custom specie. I first used Lace to get superTranscripts fasta and corresponding gff files. But I noted the header in the fasta generated by Lace is not identical to the one under resource.
The one generated by Lace:
>geneID NoTrans:2,Whirls:0
The one under resource directory (hg38_genCode24_st.fasta):
>ZNF329 segs:1-36,37-130,131-238,239-673,674-3933
I wonder if there is a way to create my own st_fasta file similar to the one under resource, so I could run clinker with my own specie?
Hi, @breons !
I am now trying Clinker on my custom specie. I first used Lace to get superTranscripts fasta and corresponding gff files. But I noted the header in the fasta generated by Lace is not identical to the one under resource.
The one generated by Lace:
The one under resource directory (hg38_genCode24_st.fasta):
I wonder if there is a way to create my own st_fasta file similar to the one under resource, so I could run clinker with my own specie?