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Empty Widb.csv even though dreplication is done #303

Description

@katkat-ri

Hello,

I have seen some previous issues on this but I still dont really understand if this is a bug of this version or I am missing something.

My dRep run exits normally. I have run 3 different binners and then binette (refinement tool) which also produces some qaulity reports based on checkM2. This is what I use as input for dRep run so it does not run checkM2 again. My goal is to extract medium and high quality MAGs so my first question is should I filter them first before dRep? Then I would like to have a file with quality metrics of the final dreplicated genomes but my widb.csv has NAs. I mean I can do this manually but still it would be helpful to have this output with the run. I attach the relevant output datatables

genomeInformation.csv
Widb.csv
log_text.txt

This is my code

dRep dereplicate "$DREP_OUT" \
    --genomes "$STAGING"/*.fa \
    --genomeInfo "$GENOME_INFO" \
    --processors "$SLURM_CPUS_PER_TASK" \
    --completeness 50 \
    --contamination 10 \
    --S_algorithm fastANI \
    --P_ani 0.9 \
    --S_ani 0.99 \
    --cov_thresh 0.1 \
    --clusterAlg average

Thanks loads!

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