feat: add halo-tree cross-correlation for robust MQG clustering bias #33

	name: CI

	on:
	push:
	branches: [main, dev]
	pull_request:
	workflow_dispatch:

	# The Makefile's CI path (CI=true) assumes GSL and HDF5 live in one conda
	# prefix (HDF5_DIR is derived from `gsl-config --prefix`), so dependencies
	# are installed with micromamba rather than apt (Debian's split hdf5/serial
	# layout is not compatible with -I$(HDF5_DIR)/include).

	jobs:
	build-and-unit-tests:
	name: Serial build + unit tests
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -el {0}
	steps:
	- uses: actions/checkout@v4

	- name: Install GSL + HDF5 (conda prefix)
	uses: mamba-org/setup-micromamba@v2
	with:
	environment-name: sage-ci
	create-args: gsl hdf5 make
	init-shell: bash

	- name: Build (serial, HDF5, -Werror via CI=true)
	run: make USE-MPI=

	- name: Run unit tests
	run: make -C tests test

	mpi-build:
	name: MPI build check
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -el {0}
	steps:
	- uses: actions/checkout@v4

	- name: Install GSL + HDF5 + OpenMPI (conda prefix)
	uses: mamba-org/setup-micromamba@v2
	with:
	environment-name: sage-ci
	# conda-forge ships the MPI compiler wrappers separately from the
	# openmpi runtime: without openmpi-mpicc there is no mpicc at all.
	create-args: gsl hdf5 openmpi openmpi-mpicc compilers make
	init-shell: bash

	- name: Build (MPI, HDF5)
	run: make

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