feat: Add permutation_tests. #8

	name: Document and Check R Package

	on:
	workflow_dispatch:
	push:
	paths:
	- "R/**"

	permissions:
	contents: write # allows committing changes

	jobs:
	document-and-check:
	runs-on: ubuntu-latest

	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

	steps:
	- name: Checkout code
	uses: actions/checkout@v4
	with:
	fetch-depth: 0 # needed for pushing later

	- name: Set up R
	uses: r-lib/actions/setup-r@v2
	with:
	use-public-rspm: true

	- name: Install dependencies
	uses: r-lib/actions/setup-r-dependencies@v2
	with:
	extra-packages: \|
	any::roxygen2
	any::devtools
	needs: roxygen2

	- name: Document with roxygen2
	run: roxygen2::roxygenise(clean = TRUE)
	shell: Rscript {0}

	- name: Run package check
	run: devtools::check(document = FALSE, error_on = "never")
	shell: Rscript {0}

	- name: Commit and push changes
	run: \|
	git config --local user.name "$GITHUB_ACTOR"
	git config --local user.email "[email protected]"

	git add man/* NAMESPACE DESCRIPTION \|\| true
	if git diff --cached --quiet; then
	echo "No documentation changes to commit."
	else
	last_message=$(git log --pretty=format:'%h' -n 1)
	git commit -m "docs($last_message): update documentation"
	git pull --ff-only origin "${GITHUB_REF#refs/heads/}"
	git push origin "${GITHUB_REF#refs/heads/}"
	fi

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