BiologicsAssayFilesTest to optionally add a no-op transform script to assay designs to test import with and without them

Author: cnathe

data/qc/noopTransform.R

@@ -0,0 +1,9 @@
+library(Rlabkey);
+
+run.props = labkey.transform.readRunPropertiesFile("${runInfo}");
+run.data.file = labkey.transform.getRunPropertyValue(run.props, "runDataFile");
+run.output.file = run.props$val3[run.props$name == "runDataFile"];
+
+run.data = read.delim(run.data.file, header=TRUE, sep="\t", quote="", check.names=FALSE);
+run.data$TransformType = "${transformOperation}";
+write.table(run.data, file=run.output.file, sep="\t", na="", row.names=FALSE, quote=FALSE);