Update tracked third-party dependency versions

Bump the dependency versions tracked in the Core Infrastructure upgrade doc to their latest releases: apacheDirectory 2.1.8, apacheMina 2.2.9, azureIdentity 1.18.4, commonmark 0.29.0, commonsLogging 1.4.0, datadog 1.63.2, googleErrorProneAnnotations 2.50.0, googleHttpClient 2.1.1, grpc 1.82.1, httpcore5 5.4.3, jaxb 4.0.9, lucene 10.5.0, postgresqlDriver 42.7.12, and sqliteJdbc 3.53.2.0.

Scope limited to doc-tracked dependencies; forced-for-consistency transitives and caveated upgrades (httpclient5/RStudio, xmlbeans/Issue 505, protobuf/TargetedMS) are excluded.

Author: labkey-martyp

gradle.properties

@@ -92,9 +92,9 @@ antVersion=1.10.17
 antlrST4Version=4.3.4
 
 #Unifying version used by DISCVR and Premium
-apacheDirectoryVersion=2.1.7
+apacheDirectoryVersion=2.1.8
 #Transitive dependency of Apache directory
-apacheMinaVersion=2.2.7
+apacheMinaVersion=2.2.9
 
 # Usually matches the version specified as a Spring Boot dependency (see springBootVersion below)
 apacheTomcatVersion=11.0.22
@@ -107,7 +107,7 @@ asmVersion=9.10
 awsSdkVersion=2.29.50
 
 # Microsoft library for sending OAuth2-authenticated notification emails via the Microsoft Graph API
-azureIdentityVersion=1.18.3
+azureIdentityVersion=1.18.4
 
 # Apache Batik -- Batik version needs to be compatible with Apache FOP, but we need to pull in batik-codec separately
 batikVersion=1.19
@@ -120,7 +120,7 @@ cglibNodepVersion=2.2.3
 
 checkerQualVersion=3.53.0
 
-commonmarkVersion=0.28.0
+commonmarkVersion=0.29.0
 
 # the beanutils version is not the default version brought from commons-validator and/or commons-digester
 # in the :server:api module but is required for some of our code to compile
@@ -135,14 +135,14 @@ commonsDiscoveryVersion=0.2
 commonsIoVersion=2.22.0
 commonsLang3Version=3.20.0
 commonsLangVersion=2.6
-commonsLoggingVersion=1.3.6
+commonsLoggingVersion=1.4.0
 commonsMath3Version=3.6.1
 commonsPoolVersion=1.6
 commonsTextVersion=1.15.0
 commonsValidatorVersion=1.10.1
 commonsVfs2Version=2.10.0
 
-datadogVersion=1.62.0
+datadogVersion=1.63.2
 
 dom4jVersion=2.2.0
 
@@ -160,13 +160,13 @@ fopVersion=2.11
 googleApiVersion=2.47.0
 googleAuthVersion=1.40.0
 googleAutoValueAnnotationsVersion=1.10.4
-googleErrorProneAnnotationsVersion=2.49.0
-googleHttpClientVersion=2.1.0
+googleErrorProneAnnotationsVersion=2.50.0
+googleHttpClientVersion=2.1.1
 googleOauthClientVersion=1.39.0
 googleProtocolBufVersion=3.25.9
 
 graphSupportVersion=1.5.2
-grpcVersion=1.81.0
+grpcVersion=1.82.1
 
 # Cloud and SequenceAnalysis bring gson in as a transitive dependency.
 # We resolve to the later version here to keep things consistent
@@ -185,7 +185,7 @@ hamcrestVersion=2.2
 htsjdkVersion=4.3.0
 
 httpclient5Version=5.5.2
-httpcore5Version=5.4.2
+httpcore5Version=5.4.3
 
 # Not used directly, but these are widely used transitive dependencies
 httpclientVersion=4.5.14
@@ -219,7 +219,7 @@ jaxbOldVersion=2.3.3
 
 # All other direct and indirect uses of JAXB use the current, jakarta-packaged versions
 jaxbApiVersion=4.0.5
-jaxbVersion=4.0.8
+jaxbVersion=4.0.9
 
 jaxrpcVersion=1.1
 
@@ -252,7 +252,7 @@ log4j2Version=2.26.0
 
 lombokVersion=1.18.46
 
-luceneVersion=10.4.0
+luceneVersion=10.5.0
 
 # Microsoft library for sending OAuth2-authenticated notification emails via the Microsoft Graph API
 microsoftGraphVersion=6.65.0
@@ -278,7 +278,7 @@ poiVersion=5.5.1
 
 pollingWatchVersion=0.2.0
 
-postgresqlDriverVersion=42.7.11
+postgresqlDriverVersion=42.7.12
 
 quartzVersion=2.5.2
 
@@ -306,7 +306,7 @@ springBootVersion=4.1.0
 springVersion=7.0.8
 springAiVersion=2.0.0
 
-sqliteJdbcVersion=3.53.1.0
+sqliteJdbcVersion=3.53.2.0
 
 # SAML brings stax2-api in as a transitive dependency. We force the latest version.
 stax2ApiVersion=4.2.2