debugging tip alignment

Author: KatyBrown

plot_phylo/amend_tree.py

@@ -67,7 +67,8 @@ def auto_axis(ax, textobj, xpos, ypos, width, height, depth, scale_bar,
         ax.set_xlim(min(xmin, xmax)-xint, max(xmin, xmax)+xint)
         ax.set_ylim(min(ymin, ymax), max(ymin, ymax))
         cboxes = get_boxes.get_boxes(ax, textobj)
-    return (textobj, ax)
+    ax.set_autoscale_on(False)
+    return (cboxes, ax)
 
 
 def draw_scale_bar(ax, width, height, depth, left, bottom,

plot_phylo/plot_phylo.py

@@ -220,8 +220,6 @@ def plot_phylo(tree, ax,
                                    countD=countD,
                                    dots=dots)
 
-    if rev_align_tips:
-        ps = amend_tree.reverse_align(ax, ps, reverse)
     # Hide axis
     if not show_axis:
         ax.set_axis_off()
@@ -239,10 +237,12 @@ def plot_phylo(tree, ax,
     textobj = [p[1] for p in ps]
     boxes = get_boxes.get_boxes(ax, textobj)
     if auto_ax:
-        textobj, ax = amend_tree.auto_axis(ax, textobj,
-                                           xpos, ypos,
-                                           width, height, maxdist,
-                                           scale_bar, branch_lengths,
-                                           reverse=reverse)
-
+        boxes, ax = amend_tree.auto_axis(ax, textobj,
+                                         xpos, ypos,
+                                         width, height, maxdist,
+                                         scale_bar, branch_lengths,
+                                         reverse=reverse)
+    ax.set_autoscale_on(False)
+    if rev_align_tips:
+        ps = amend_tree.reverse_align(ax, ps, reverse)
     return (boxes)