alfy: ALignment-Free local homologY
- Description: Fast detection of local homologies between a query sequence and a set of subject sequences, as explained further here.
- Authors: Mirjana Domazet-Loso, Beatriz Vieira Mourato, and Bernhard Haubold
- License: Gnu GPL
- Contact: [email protected], [email protected], or [email protected]
The program alfy depends on the divsufsort library. On Debian-like
systems we can install it with
sudo apt install libdivsufsort-devOn macOS we can use
brew install libdivsufsortThen we can run
maketo make the executables alfy and ms2nn in the directory bin, the
example data in directory data, and the directory playground for
the tutorial.
The command
make testdownloads the test data into the directory data and tests alfy.