- Initial Bioconductor submission.
- Implements seven statistical methods for ligand activity inference from bulk transcriptomics:
gsva_limma,pca_limma,cfgsea,run_limma,gsva_plsda,pca_plsda, andcytosig_custom_ridge. - Includes curated ligand-receptor interaction (LRI) databases:
dbs_all,dbs_subset,dbs_cytosig. - Includes CytoSig beta coefficient matrix (
cytosig_beta) for ridge regression. - Includes golimumab demo dataset (
golimumab) derived from GEO accession GSE92415. - Supports paired and unpaired experimental designs via
limma::duplicateCorrelation. - Parallel execution via
futureandfuture.apply. - Rank-based ensemble scoring combining LRI-based methods with CytoSig via
create_ensemble_results().