- Current code: main.R calls our current analysis scripts in the correct order. You can find all the R scripts in
R/folder. Before running the analysis, please download the zip file from here and unzip the content into a directory calledaccessory_data.
Here are the packages required for the main analysis.
| Package | Version |
|---|---|
| R | 4.1.2 |
| Seurat | 4.3.0 |
| harmony | 0.1.1 |
| presto | 1.0.0 |
| fgsea | 1.20.0 |
| ggplot2 | 3.4.4 |
| dplyr | 1.1.4 |
| cowplot | 1.1.1 |
| dplyr | 1.1.4 |
| magrittr | 2.0.3 |
| Matrix | 1.5.3 |
| stringr | 1.5.0 |