This directory contain all the analysis of integrating CrebA ChIP-seq data with scRNA-seq results. The entire pipeline is in the snakemake file inside workflow folder. You can find the requirements for the Python packages in the python_requirements.txt.
The CLI tools used are below. You can also install them by installing the entire MEME Suite.
| Package | Version |
|---|---|
| bedtools | 2.31.1 |
| dreme | 5.5.4 |
| tomtom | 5.5.4. |
Before running the analysis code, please download the zip file from here and unzip the content into a directory called input.