Fix minor bugs

Author: lorenzotomada

experiments/config.yaml

@@ -1,4 +1,4 @@
-dim: 30
+dim: 10
 density: 0.2
 n_processes: 1
-plot: true
+plot: false

scripts/profiling_memory.py

@@ -138,7 +138,6 @@ def compute_eigvals(A, n_procs):
     import numpy as np
 
     df = pd.read_csv("logs/memory_profile.csv")
-    df = df.groupby(["matrix_size", "n_processes"], as_index=False).mean()
 
     nproc_values = sorted(df["n_processes"].unique())
 
@@ -164,8 +163,8 @@ def compute_eigvals(A, n_procs):
         label="SciPy",
     )
 
-    for i, nproc in enumerate(nproc_values):
-        subset = df[df["n_processes"] == nproc]
+    for nproc in nproc_values:
+        subset = df[df["n_processes"] == nproc].sort_values("matrix_size")
         label = f"Divide and Conquer ({nproc} proc{'s' if nproc > 1 else ''})"
         plt.plot(
             subset["matrix_size"],

shell/submit.sbatch

@@ -32,8 +32,8 @@ module load openmpi3/3.1.4
 conda activate devtools_scicomp
 
 # Ranges over which we iterate
-n_processes=(1 2)
-matrix_sizes=(5 10 20)
+n_processes=(1 2 4 8)
+matrix_sizes=(10 100 500 1000)
 
 last_dim="${matrix_sizes[-1]}"
 last_nproc="${n_processes[-1]}"
@@ -51,7 +51,7 @@ for dim in "${matrix_sizes[@]}"; do
     echo "------------------"
 
     sed -i "s/^dim: .*/dim: $dim/" $CONFIG_FILE
-    sed -i "s/^n_processes: .*/n_processes: $n_processes/" $CONFIG_FILE
+    sed -i "s/^n_processes: .*/n_processes: $n_p/" $CONFIG_FILE
     sed -i "s/^plot: .*/plot: false/" $CONFIG_FILE
     echo "Running with size=$dim and n_processes=$n_p"
 

shell/submit.sh

@@ -1,8 +1,8 @@
 #!/bin/bash
 
 # Ranges over which we iterate
-n_processes=(1 2)
-matrix_sizes=(5 10 20)
+n_processes=(1 2 4 8)
+matrix_sizes=(10 100 500 1000)
 
 last_dim="${matrix_sizes[-1]}"
 last_nproc="${n_processes[-1]}"
@@ -20,7 +20,7 @@ for dim in "${matrix_sizes[@]}"; do
     echo "------------------"
 
     sed -i "s/^dim: .*/dim: $dim/" $CONFIG_FILE
-    sed -i "s/^n_processes: .*/n_processes: $n_processes/" $CONFIG_FILE
+    sed -i "s/^n_processes: .*/n_processes: $n_p/" $CONFIG_FILE
     sed -i "s/^plot: .*/plot: false/" $CONFIG_FILE
     echo "Running with size=$dim and n_processes=$n_p"