small issue when generating an R easyconfig

[pescobar]

@pneerincx thanks for the useful script to generate an easyconfig for R

The only small problem I found is that I had to comment out this line so it works for me:
https://github.com/fgeorgatos/easybuild.experimental/blob/master/users/pneerincx/generateEasyConfig.R#L104

Before commenting out that line it was crashing and printing the help. After commenting it I get the easyconfig and this output:

2015-10-30 17:34:56 INFO::Log level set to INFO.
2015-10-30 17:34:56 INFO::Will store EasyConfig in /import/bc2/home/schwede/escobar/generate-R-easyconfig/R-3.2.2-goolf-1.7.20.eb
Bioconductor version 3.2 (BiocInstaller 1.20.0), ?biocLite for help
2015-10-30 17:40:52 WARNING::Failed to determine repo origin for package NA .
2015-10-30 17:40:52 WARNING::Failed to determine repo origin for 1 package!
2015-10-30 17:40:52 INFO::==========================================================================
2015-10-30 17:40:52 INFO::: Total R packages processed:                                415
2015-10-30 17:40:52 INFO:::  * Resolved packages    (will be added to EasyConfig):     414  ( 99.76%)
2015-10-30 17:40:52 INFO:::  * Unavailable packages (missing from EasyConfig):           1  (  0.24%)
2015-10-30 17:40:52 INFO::==========================================================================
2015-10-30 17:40:52 INFO::Finished!

maybe the script is not parsing correctly the name of one of my libraries?

thanks again for this nice contribution

[pneerincx]

Hi Pablo, it indeed looks package name was not parsed correctly resulting in "NA". It's been a while (saw this issue only now), but I would still like know if you managed to figure out which package was causing the problem, so I can improve the error handling. Was it by any chance a package that was manually installed from elsewhere and not available from a CRAN or BioConductor repo?