Merge branch 'SciML:master' into master

Author: xtalax

.buildkite/pipeline.yml

@@ -0,0 +1,18 @@
+steps:
+  - label: "Julia 1"
+    plugins:
+      - JuliaCI/julia#v1:
+          version: "1"
+      - JuliaCI/julia-test#v1:
+           coverage: false # 1000x slowdown
+    agents:
+      queue: "juliagpu"
+      cuda: "*"
+    timeout_in_minutes: 60
+    # Don't run Buildkite if the commit message includes the text [skip tests]
+    if: build.message !~ /\[skip tests\]/
+
+env:
+  GROUP: GPU
+  JULIA_PKG_SERVER: "" # it often struggles with our large artifacts
+  # SECRET_CODECOV_TOKEN: "..."

.github/workflows/CI.yml

@@ -0,0 +1,42 @@
+name: CI
+on:
+  pull_request:
+    branches:
+      - master
+  push:
+    branches:
+      - master
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    continue-on-error: ${{ matrix.group == 'MOLFiniteDifference' }}
+    strategy:
+      matrix:
+        group:
+          - OperatorInterface
+          - MOLFiniteDifference
+          - Multithreading
+          - Misc
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: 1
+      - uses: actions/cache@v1
+        env:
+          cache-name: cache-artifacts
+        with:
+          path: ~/.julia/artifacts
+          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
+          restore-keys: |
+            ${{ runner.os }}-test-${{ env.cache-name }}-
+            ${{ runner.os }}-test-
+            ${{ runner.os }}-
+      - uses: julia-actions/julia-buildpkg@v1
+      - uses: julia-actions/julia-runtest@v1
+        env:
+          GROUP: ${{ matrix.group }}
+      - uses: julia-actions/julia-processcoverage@v1
+      - uses: codecov/codecov-action@v1
+        with:
+          file: lcov.info

.github/workflows/CompatHelper.yml

@@ -11,7 +11,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        julia-version: [1.2.0]
+        julia-version: [1]
         julia-arch: [x86]
         os: [ubuntu-latest]
     steps:
@@ -23,4 +23,4 @@ jobs:
       - name: CompatHelper.main()
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        run: julia -e 'using CompatHelper; CompatHelper.main()'
+        run: julia -e 'using CompatHelper; CompatHelper.main()'

.github/workflows/Documentation.yml

@@ -0,0 +1,24 @@
+name: Documentation
+
+on:
+  push:
+    branches:
+      - master
+    tags: '*'
+  pull_request:
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@latest
+        with:
+          version: '1'
+      - name: Install dependencies
+        run: julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
+      - name: Build and deploy
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # For authentication with GitHub Actions token
+          DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} # For authentication with SSH deploy key
+        run: julia --project=docs/ docs/make.jl

.github/workflows/TagBot.yml

@@ -1,11 +1,15 @@
 name: TagBot
 on:
-  schedule:
-    - cron: 0 * * * *
+  issue_comment:
+    types:
+      - created
+  workflow_dispatch:
 jobs:
   TagBot:
+    if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
     runs-on: ubuntu-latest
     steps:
       - uses: JuliaRegistries/TagBot@v1
         with:
           token: ${{ secrets.GITHUB_TOKEN }}
+          ssh: ${{ secrets.DOCUMENTER_KEY }}

.gitignore

@@ -3,3 +3,6 @@
 *.jl.mem
 deps/deps.jl
 Manifest.toml
+*.png
+*.gif
+docs/build

.gitlab-ci.yml

@@ -1,30 +1,48 @@
 name = "DiffEqOperators"
 uuid = "9fdde737-9c7f-55bf-ade8-46b3f136cc48"
 authors = ["Chris Rackauckas <[email protected]>"]
-version = "4.10.0"
+version = "4.35.0"
 
 [deps]
 BandedMatrices = "aae01518-5342-5314-be14-df237901396f"
 BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0"
 DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e"
+DomainSets = "5b8099bc-c8ec-5219-889f-1d9e522a28bf"
 ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
 LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02"
+LazyBandedMatrices = "d7e5e226-e90b-4449-9968-0f923699bf6f"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
+LoopVectorization = "bdcacae8-1622-11e9-2a5c-532679323890"
 ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78"
 NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd"
+NonlinearSolve = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
+Requires = "ae029012-a4dd-5104-9daa-d747884805df"
+RuntimeGeneratedFunctions = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47"
+SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
 SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
+SparseDiffTools = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
 StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
 SuiteSparse = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
+SymbolicUtils = "d1185830-fcd6-423d-90d6-eec64667417b"
 
 [compat]
-BandedMatrices = "0.12, 0.13, 0.14, 0.15"
-BlockBandedMatrices = "0.6, 0.7, 0.8"
+BandedMatrices = "0.15.11, 0.16"
+BlockBandedMatrices = "0.8.6, 0.9, 0.10, 0.11"
 DiffEqBase = "6.4.1"
+DomainSets = "0.5"
 ForwardDiff = "0.10"
-LazyArrays = "0.14, 0.15, 0.16"
-ModelingToolkit = "0.10.0, 1.0, 2.0, 3.0"
-NNlib = "0.6"
-StaticArrays = "0.10, 0.11, 0.12"
+LazyArrays = "0.17, 0.18, 0.19, 0.20, 0.21, 0.22"
+LazyBandedMatrices = "0.5, 0.6, 0.7"
+LoopVectorization = "0.12"
+ModelingToolkit = "7"
+NNlib = "0.6, 0.7"
+NonlinearSolve = "0.3.7"
+Requires = "1"
+RuntimeGeneratedFunctions = "0.4, 0.5"
+SciMLBase = "1.11"
+SparseDiffTools = "1.17"
+StaticArrays = "0.10, 0.11, 0.12, 1.0"
+SymbolicUtils = "0.11, 0.12, 0.13, 0.14, 0.15, 0.16, 0.17, 0.18"
 julia = "1"
 
 [extras]
@@ -33,9 +51,9 @@ OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
 Parameters = "d96e819e-fc66-5662-9728-84c9c7592b0a"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 SafeTestsets = "1bc83da4-3b8d-516f-aca4-4fe02f6d838f"
-SimpleDifferentialOperators = "7ccca996-40d6-5c2f-be7f-4eb2934af9c4"
 SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
 [targets]
-test = ["FillArrays", "OrdinaryDiffEq", "Parameters", "Random", "SafeTestsets", "SimpleDifferentialOperators", "SpecialFunctions", "Test"]
+test = ["FillArrays", "OrdinaryDiffEq", "Parameters", "Random", "SafeTestsets", "SpecialFunctions", "Test", "Zygote"]